Os01g0507500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0507500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.6 | 0.28 | 10.6 | -0.975 | 0.655 | -0.885 | -0.17 | 1.68 | -0.061 | 3.45 | 25 | 4108 | -- | -- |
| 36.99 | 0.283 | 10.6 | -0.669 | 0.723 | -0.774 | 0.0545 | -- | -0.0137 | 3.18 | 21.4 | 3224 | -- | -- |
| 35.69 | 0.278 | 10.6 | -0.977 | 0.654 | -0.885 | -- | 1.71 | -0.0618 | 3.42 | 24.95 | 4104 | -- | -- |
| 36.88 | 0.283 | 10.6 | -0.665 | 0.725 | -0.8 | -- | -- | -0.0259 | 3.2 | 21.3 | 3207 | -- | -- |
| 59.05 | 0.358 | 10.6 | -1.01 | -- | -1.01 | -- | 1.71 | -0.0946 | -- | 24.84 | 4036 | -- | -- |
| 53.31 | 0.342 | 10.5 | -0.221 | 0.729 | -- | -0.202 | -- | 0.227 | 3.17 | -- | -- | -- | -- |
| 53.44 | 0.342 | 10.5 | -0.217 | 0.728 | -- | -- | -- | 0.228 | 3.13 | -- | -- | -- | -- |
| 58.99 | 0.358 | 10.6 | -0.52 | -- | -0.857 | -- | -- | -0.0391 | -- | 24.2 | 2623 | -- | -- |
| 44.11 | 0.309 | 10.6 | -- | 0.677 | -0.486 | -- | -- | 0.0804 | 3.16 | 23.6 | 2768 | -- | -- |
| 83.63 | 0.427 | 10.5 | -0.186 | -- | -- | -- | -- | 0.247 | -- | -- | -- | -- | -- |
| 54.69 | 0.346 | 10.5 | -- | 0.723 | -- | -- | -- | 0.252 | 3.13 | -- | -- | -- | -- |
| 64.65 | 0.374 | 10.6 | -- | -- | -0.818 | -- | -- | 0.0814 | -- | 24.95 | 2579 | -- | -- |
| 84.54 | 0.429 | 10.5 | -- | -- | -- | -- | -- | 0.268 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.82 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 7 | 33.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 9 | 33.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 249 | 34.75 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 18 |
| 262 | 34.78 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 16 |
| 288 | 34.85 | temperature | 25 | 4320 | > th | dose independent | rect. | 13 | 18 |
| 310 | 34.90 | temperature | 25 | 4320 | > th | dose independent | rect. | 13 | 16 |
| 335 | 34.95 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 357 | 35.00 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 421 | 35.13 | temperature | 25 | 4320 | < th | dose independent | sin | 15 | NA |
| 447 | 35.19 | temperature | 25 | 4320 | > th | dose independent | sin | 15 | NA |
| 640 | 35.62 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 680 | 35.71 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 21 |
| 864 | 35.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 890 | 36.02 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 910 | 36.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 933 | 36.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 940 | 36.07 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 954 | 36.10 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 974 | 36.11 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 23 |
| 991 | 36.13 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 23 |