BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0507500 Os01g0507500|AK102891
         (319 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71080.1  | chr1:26809987-26811645 REVERSE LENGTH=327          253   1e-67
AT5G38050.1  | chr5:15187592-15188639 FORWARD LENGTH=282          194   6e-50

>AT1G71080.1 | chr1:26809987-26811645 REVERSE LENGTH=327
          Length = 326

 Score =  253 bits (645), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 144/282 (51%), Positives = 191/282 (67%), Gaps = 22/282 (7%)

Query: 1   MASGNSGEPSTAPQPNRWYELRLGSSCRDPSPTAKFCTLRYEFKPASIDKTQAGSLQKTK 60
           M++ +  EPSTAP+ ++WY+L LGSS +D S + KFCTLRYEFKPASIDK ++GS+ K K
Sbjct: 1   MSNHSRDEPSTAPKTDQWYDLVLGSSAKDDS-SHKFCTLRYEFKPASIDKNRSGSMHKKK 59

Query: 61  DNRVTVEFHNNQPGKPKVTFEGSQEEYKDNDGVLFFDGETFRLERLHRAVKRLRHVRVPG 120
           DNRV+VEF NNQPGKPKVTFEGS E+YK++D VLFFDGE FRLERLHRAV +LRHVR PG
Sbjct: 60  DNRVSVEFQNNQPGKPKVTFEGSSEDYKESDAVLFFDGEKFRLERLHRAVTQLRHVRTPG 119

Query: 121 ESSAATSATTGMGESHSPPLPKVGKSPAMSKPAVHSVPVEVERIDIGEPENPGLRNNNRS 180
           ES+AA+ +   + E    P+ +  KSP +++  +  VPVEVERI+IG+PEN     N   
Sbjct: 120 ESAAASQSAVPV-EHRLSPVGRAAKSPQVNRSLLPDVPVEVERIEIGKPENSAEPAN--- 175

Query: 181 TTYQPVTTNPFSFSPDPNDQEENLDILG-------DDDNGSPNNMSSGQGASVRGFDINI 233
           T   P T+ P     D  D+ + +D++        ++DN    N   G+      +  ++
Sbjct: 176 TGNVPATS-PVEDKNDDGDEHQEIDLVEIFGSFTPENDNAEKENADGGE------YVESL 228

Query: 234 PNQLDI-DDEIADV--DVSDEADEGLNAAEALRAQVNAEGQQ 272
             QL + ++EIADV  D   E ++GLNAAEALRAQVNAE Q+
Sbjct: 229 NKQLSMTEEEIADVDDDSGGEGEKGLNAAEALRAQVNAEVQK 270



>AT5G38050.1 | chr5:15187592-15188639 FORWARD LENGTH=282
          Length = 281

 Score =  194 bits (492), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 120/269 (44%), Positives = 160/269 (59%), Gaps = 55/269 (20%)

Query: 8   EPSTAPQPNRWYELRLGSSC--RDPSPTAKFCTLRYEFKPASIDKTQAGSLQKTKDNRVT 65
           EP  AP+PNRWY + LG +    + S + KFCTLRYEFKPASID T+ G L K+KDN+VT
Sbjct: 7   EPKIAPEPNRWYNITLGPTLLNNNHSYSPKFCTLRYEFKPASIDSTKPGLLHKSKDNKVT 66

Query: 66  VEFHNNQPGKPKVTFEGSQEEY--KDNDGVLFFDGETFRLERLHRAVKRLRHVRVPGESS 123
           +EF NNQ  KPKV F+G  E+Y  +D D +LFFDGE FRLE+LHR+VKRL+ +RVP ES+
Sbjct: 67  LEFQNNQLNKPKVRFDGVSEDYNDRDKDAILFFDGENFRLEKLHRSVKRLKCLRVPDESA 126

Query: 124 AATSATTGMGESHSPPLPKVGKSPAMSKPAVHSVPVEVERIDIGEPENPGLRNNNRSTTY 183
           +A+   T +     PP+ K               PV++  IDI                 
Sbjct: 127 SASRVVTKI----VPPVEK---------------PVKMAHIDIN---------------- 151

Query: 184 QPVTTNPFSFSPDPNDQEENLDILGDDDNGSPNNMSSGQGASVRGFDINIPNQLDI-DDE 242
                NP  F  D N +++N     +++  S     +G G  +   DIN+P+  ++ DDE
Sbjct: 152 -----NPVDFEEDVNIEDDN-----EEETLSRKEFQTG-GLDI---DINLPHPAEMEDDE 197

Query: 243 IADVDVS-DEADEGLNAAEALRAQVNAEG 270
           IA VD++ DE+ +GLNAAEALRAQVNAE 
Sbjct: 198 IAVVDINDDESYKGLNAAEALRAQVNAEA 226



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.308    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,904,355
Number of extensions: 332137
Number of successful extensions: 932
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 925
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,392,385
Effective search space: 1846324700
Effective search space used: 1846324700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 112 (47.8 bits)