Os01g0505400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thiamine pyrophosphate enzyme, C-terminal TPP-binding domain containing protein.
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Os01g0505400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thiamine pyrophosphate enzyme, C-terminal TPP-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.04 | 0.262 | 13.3 | -0.183 | 0.332 | -0.643 | -0.00854 | -1.52 | -0.193 | 24 | 66 | 7636 | -- | -- |
| 34.11 | 0.272 | 13.3 | -0.212 | 0.337 | -0.649 | 0.0224 | -- | -0.196 | 0.177 | 66.62 | 7668 | -- | -- |
| 31.04 | 0.259 | 13.3 | -0.18 | 0.329 | -0.643 | -- | -1.52 | -0.193 | 0.013 | 65.92 | 7668 | -- | -- |
| 34.11 | 0.272 | 13.3 | -0.208 | 0.338 | -0.651 | -- | -- | -0.196 | 0.194 | 66.6 | 7678 | -- | -- |
| 36.79 | 0.282 | 13.3 | -0.119 | -- | -0.664 | -- | -1.4 | -0.216 | -- | 66.43 | 8230 | -- | -- |
| 40.71 | 0.299 | 13.3 | -0.319 | 0.346 | -- | 0.0816 | -- | -0.171 | 23.6 | -- | -- | -- | -- |
| 40.74 | 0.299 | 13.3 | -0.322 | 0.345 | -- | -- | -- | -0.171 | 23.6 | -- | -- | -- | -- |
| 39.66 | 0.293 | 13.3 | -0.188 | -- | -0.671 | -- | -- | -0.225 | -- | 67 | 8250 | -- | -- |
| 35.19 | 0.276 | 13.3 | -- | 0.335 | -0.686 | -- | -- | -0.172 | 0.116 | 66.01 | 7679 | -- | -- |
| 48.23 | 0.325 | 13.2 | -0.312 | -- | -- | -- | -- | -0.167 | -- | -- | -- | -- | -- |
| 43.47 | 0.308 | 13.2 | -- | 0.342 | -- | -- | -- | -0.135 | 23.6 | -- | -- | -- | -- |
| 40.56 | 0.297 | 13.3 | -- | -- | -0.721 | -- | -- | -0.221 | -- | 67.41 | 8258 | -- | -- |
| 50.8 | 0.333 | 13.2 | -- | -- | -- | -- | -- | -0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.48 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 3 | 31.55 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 12 | 2 |
| 5 | 31.64 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 7 | 31.69 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 6 |
| 10 | 31.71 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 6 |
| 16 | 31.72 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 17 |
| 68 | 31.76 | humidity | 60.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 74 | 31.78 | humidity | 60.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 81 | 31.80 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 113 | 31.91 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 196 | 32.05 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 214 | 32.07 | humidity | 60.0 | 14400 | > th | dose independent | no | NA | NA |
| 241 | 32.07 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 22 |
| 248 | 32.07 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 297 | 32.08 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 312 | 32.09 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 13 | NA |
| 319 | 32.10 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 12 | 7 |
| 321 | 32.11 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 341 | 32.12 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 369 | 32.13 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 21 |
| 473 | 32.23 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 20 |
| 506 | 32.26 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 13 |
| 545 | 32.27 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 558 | 32.28 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 24 | 18 |
| 559 | 32.28 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 564 | 32.29 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 22 |
| 581 | 32.30 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 23 |
| 606 | 32.31 | humidity | 60.0 | 14400 | < th | dose independent | no | NA | NA |
| 718 | 32.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 19 |
| 724 | 32.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 811 | 32.36 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 24 | 22 |
| 820 | 32.37 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 23 |
| 837 | 32.38 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 14 | NA |
| 839 | 32.38 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 849 | 32.39 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 860 | 32.39 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 932 | 32.46 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 17 |
| 935 | 32.46 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 17 |
| 944 | 32.47 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 948 | 32.47 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 17 |
| 953 | 32.47 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 11 |
| 970 | 32.48 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 11 |
| 990 | 32.49 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 15 |
| 993 | 32.49 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 15 |