BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0505400 Os01g0505400|AK065111
         (117 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17380.1  | chr5:5724920-5726720 REVERSE LENGTH=573            191   7e-50

>AT5G17380.1 | chr5:5724920-5726720 REVERSE LENGTH=573
          Length = 572

 Score =  191 bits (485), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 86/106 (81%), Positives = 100/106 (94%)

Query: 12  LQTLVRYQLPVVVIVFNNNGVYGGDRRSPDEITGPYKDDPAPTSFVPAAGYHKMMEAFGG 71
           ++TLVRY L VV+IVFNN GVYGGDRR P+EI+GP+K+DPAPTSFVP AGYHK++EAFGG
Sbjct: 467 VETLVRYNLAVVIIVFNNGGVYGGDRRGPEEISGPHKEDPAPTSFVPNAGYHKLIEAFGG 526

Query: 72  KGYLVETPDELKSALSESFRARKPAVINVIIDPYAGAESGRMQHKN 117
           KGY+VETPDELKSAL+ESF ARKPAV+NVIIDP+AGAESGR+QHKN
Sbjct: 527 KGYIVETPDELKSALAESFAARKPAVVNVIIDPFAGAESGRLQHKN 572



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,732,087
Number of extensions: 114962
Number of successful extensions: 205
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 32
Effective length of database: 8,776,209
Effective search space: 280838688
Effective search space used: 280838688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)