Os01g0503400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to OsNramp1 (Integral membrane protein).
FiT-DB / Search/ Help/ Sample detail
|
Os01g0503400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to OsNramp1 (Integral membrane protein).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.72 | 0.61 | 6.96 | -0.739 | 1.44 | 4.52 | 0.757 | -8.25 | 0.406 | 23.7 | 0.3877 | 884 | -- | -- |
| 170.98 | 0.609 | 6.89 | -0.474 | 1.43 | 2.2 | 0.806 | -- | 0.39 | 23.6 | 0.7968 | 964 | -- | -- |
| 171.17 | 0.609 | 6.96 | -0.777 | 1.43 | 4.57 | -- | -8.22 | 0.404 | 23.7 | 0.3923 | 881 | -- | -- |
| 173.22 | 0.613 | 6.89 | -0.546 | 1.43 | 2.37 | -- | -- | 0.428 | 23.7 | 0.737 | 894 | -- | -- |
| 297.28 | 0.803 | 6.92 | -0.782 | -- | 4.72 | -- | -7.94 | 0.411 | -- | 0.7106 | 844 | -- | -- |
| 208.36 | 0.677 | 6.91 | -0.226 | 1.53 | -- | 1.12 | -- | 0.333 | 23.7 | -- | -- | -- | -- |
| 213.79 | 0.685 | 6.91 | -0.271 | 1.52 | -- | -- | -- | 0.328 | 23.7 | -- | -- | -- | -- |
| 297.18 | 0.803 | 6.87 | -0.564 | -- | 2.44 | -- | -- | 0.397 | -- | 0.8702 | 844 | -- | -- |
| 179.77 | 0.624 | 6.88 | -- | 1.43 | 2.01 | -- | -- | 0.437 | 23.7 | 0.609 | 878 | -- | -- |
| 359.28 | 0.886 | 6.88 | -0.227 | -- | -- | -- | -- | 0.347 | -- | -- | -- | -- | -- |
| 215.74 | 0.687 | 6.9 | -- | 1.52 | -- | -- | -- | 0.358 | 23.7 | -- | -- | -- | -- |
| 304.71 | 0.813 | 6.85 | -- | -- | 2.24 | -- | -- | 0.467 | -- | 0.8902 | 852 | -- | -- |
| 360.64 | 0.886 | 6.87 | -- | -- | -- | -- | -- | 0.372 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.16 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 3 | 157.98 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 9 | 161.44 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 32 | 164.75 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 35 | 165.10 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 47 | 165.87 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 19 | 3 |
| 52 | 166.04 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 14 |
| 54 | 166.23 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 13 |
| 64 | 166.42 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 11 |
| 72 | 166.61 | humidity | 80.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 84 | 166.97 | humidity | 80.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 108 | 167.77 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 15 | 7 |
| 115 | 168.02 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 11 | 8 |
| 116 | 168.04 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 12 | 10 |
| 126 | 168.25 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 21 |
| 167 | 169.22 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 9 | 13 |
| 182 | 169.48 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 186 | 169.54 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 196 | 169.76 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 205 | 170.10 | radiation | 1.0 | 270 | < th | dose independent | sin | 1 | NA |
| 214 | 170.25 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 11 | 16 |
| 216 | 170.28 | radiation | 1.0 | 270 | > th | dose independent | sin | 1 | NA |
| 229 | 170.46 | radiation | 1.0 | 720 | < th | dose dependent | sin | 22 | NA |
| 271 | 171.25 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 12 |
| 275 | 171.30 | radiation | 1.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 287 | 171.57 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 8 |
| 335 | 172.25 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 336 | 172.28 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 337 | 172.28 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 349 | 172.46 | humidity | 80.0 | 720 | > th | dose dependent | sin | 20 | NA |
| 369 | 172.70 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 370 | 172.70 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 12 | 16 |
| 381 | 172.80 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 388 | 172.85 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 390 | 172.86 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 13 | 15 |
| 394 | 172.90 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 397 | 172.96 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 23 | 20 |
| 411 | 173.06 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 413 | 173.06 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 432 | 173.22 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 467 | 173.48 | precipitation | 0.1 | 720 | > th | dose dependent | sin | 1 | NA |
| 474 | 173.50 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 15 | 13 |
| 487 | 173.56 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 535 | 173.71 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 8 | 20 |
| 564 | 173.91 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 20 |
| 567 | 173.94 | radiation | 1.0 | 720 | < th | dose independent | sin | 23 | NA |
| 615 | 174.04 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 11 |
| 645 | 174.07 | precipitation | 0.1 | 270 | > th | dose independent | sin | 12 | NA |
| 658 | 174.12 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 7 |
| 681 | 174.25 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 4 |
| 684 | 174.28 | humidity | 80.0 | 10 | > th | dose independent | rect. | 3 | 17 |
| 744 | 174.59 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 747 | 174.60 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 13 | 20 |
| 772 | 174.70 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 822 | 174.83 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 858 | 174.98 | precipitation | 0.1 | 720 | < th | dose independent | sin | 1 | NA |
| 859 | 174.98 | precipitation | 0.1 | 720 | < th | dose dependent | sin | 1 | NA |
| 903 | 175.15 | precipitation | 0.1 | 720 | > th | dose independent | sin | 1 | NA |
| 928 | 175.23 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 8 | 20 |
| 946 | 175.29 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 971 | 175.38 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 997 | 175.43 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 3 | 23 |