Os01g0502800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os01g0502800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.56 | 0.228 | 11.3 | -1.86 | 0.459 | -0.232 | 0.273 | 1.43 | -0.0233 | 5.89 | 19.69 | 1361 | -- | -- |
| 27.19 | 0.243 | 11.3 | -1.61 | 0.47 | -0.317 | 0.312 | -- | 0.021 | 5.85 | 21.5 | 1387 | -- | -- |
| 23.7 | 0.227 | 11.3 | -1.84 | 0.461 | -0.221 | -- | 1.52 | -0.0159 | 5.89 | 19.3 | 1349 | -- | -- |
| 26.42 | 0.239 | 11.3 | -1.73 | 0.497 | -0.459 | -- | -- | -0.0141 | 5.44 | 17.93 | 4417 | -- | -- |
| 34.59 | 0.274 | 11.3 | -1.81 | -- | -0.354 | -- | 1.5 | -0.00129 | -- | 18.69 | 1372 | -- | -- |
| 30.94 | 0.261 | 11.2 | -1.47 | 0.472 | -- | 0.121 | -- | 0.104 | 5.83 | -- | -- | -- | -- |
| 30.98 | 0.261 | 11.3 | -1.47 | 0.473 | -- | -- | -- | 0.104 | 5.81 | -- | -- | -- | -- |
| 35.99 | 0.279 | 11.3 | -1.81 | -- | -0.678 | -- | -- | -0.0229 | -- | 17.1 | 4158 | -- | -- |
| 47.57 | 0.321 | 11.1 | -- | 0.306 | 0.936 | -- | -- | 0.625 | 6.08 | 21.01 | 47520 | -- | -- |
| 42.56 | 0.305 | 11.3 | -1.46 | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
| 88.16 | 0.439 | 11.2 | -- | 0.45 | -- | -- | -- | 0.268 | 5.97 | -- | -- | -- | -- |
| 57.31 | 0.353 | 11.1 | -- | -- | 0.943 | -- | -- | 0.6 | -- | 21.75 | 47520 | -- | -- |
| 98.67 | 0.464 | 11.2 | -- | -- | -- | -- | -- | 0.277 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 8 |
| 5 | 23.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 8 |
| 10 | 23.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 11 | 23.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 13 | 23.37 | temperature | 20 | 1440 | < th | dose independent | sin | 16 | NA |
| 23 | 23.39 | temperature | 20 | 1440 | > th | dose independent | sin | 16 | NA |
| 158 | 23.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 159 | 23.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 162 | 23.67 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 191 | 23.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 194 | 23.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 198 | 23.70 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 218 | 23.71 | temperature | 20 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 233 | 23.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 237 | 23.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 239 | 23.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 248 | 23.73 | temperature | 20 | 1440 | < th | dose dependent | rect. | 19 | 8 |
| 284 | 23.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 377 | 23.85 | temperature | 20 | 1440 | < th | dose dependent | sin | 14 | NA |
| 522 | 24.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 17 |
| 557 | 24.06 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 576 | 24.07 | radiation | 1 | 4320 | < th | dose dependent | rect. | 6 | 11 |
| 636 | 24.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 8 | 21 |
| 763 | 24.21 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 770 | 24.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 11 | 17 |
| 776 | 24.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 21 |
| 789 | 24.23 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 795 | 24.23 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 15 |
| 810 | 24.24 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 817 | 24.24 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 17 |
| 822 | 24.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 826 | 24.25 | wind | 9 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 831 | 24.25 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 843 | 24.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 844 | 24.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 896 | 24.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 898 | 24.28 | wind | 9 | 43200 | < th | dose independent | rect. | 3 | 10 |
| 910 | 24.28 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 21 |
| 934 | 24.29 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 946 | 24.29 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 953 | 24.30 | temperature | 20 | 1440 | < th | dose independent | sin | 3 | NA |
| 957 | 24.30 | wind | 9 | 43200 | > th | dose independent | rect. | 21 | 16 |