Os01g0501700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TATC (CpTatC).
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Os01g0501700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TATC (CpTatC).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.13 | 0.245 | 14.2 | 0.592 | 1.72 | -0.519 | -0.0637 | 1.03 | 0.0584 | 15.7 | 19.8 | 1908 | -- | -- |
| 29.65 | 0.254 | 14.2 | 0.639 | 1.73 | -0.665 | -0.193 | -- | 0.0668 | 15.6 | 19.6 | 3281 | -- | -- |
| 27.14 | 0.243 | 14.2 | 0.591 | 1.71 | -0.518 | -- | 1.03 | 0.0582 | 15.7 | 19.8 | 1911 | -- | -- |
| 28.48 | 0.249 | 14.2 | 0.541 | 1.71 | -0.843 | -- | -- | 0.0414 | 15.7 | 18.4 | 3526 | -- | -- |
| 183.56 | 0.631 | 14.2 | 0.687 | -- | -0.61 | -- | 1.1 | 0.0842 | -- | 20.2 | 2575 | -- | -- |
| 37.55 | 0.287 | 14.3 | 0.136 | 1.72 | -- | -0.0838 | -- | -0.118 | 15.6 | -- | -- | -- | -- |
| 37.57 | 0.287 | 14.3 | 0.135 | 1.72 | -- | -- | -- | -0.119 | 15.6 | -- | -- | -- | -- |
| 184.96 | 0.633 | 14.2 | 0.467 | -- | -0.738 | -- | -- | 0.0245 | -- | 20.2 | 2517 | -- | -- |
| 31.08 | 0.261 | 14.2 | -- | 1.79 | -0.391 | -- | -- | -0.0667 | 15.5 | 20.62 | 1686 | -- | -- |
| 201.14 | 0.663 | 14.3 | 0.0628 | -- | -- | -- | -- | -0.165 | -- | -- | -- | -- | -- |
| 38.05 | 0.289 | 14.3 | -- | 1.71 | -- | -- | -- | -0.134 | 15.6 | -- | -- | -- | -- |
| 182.73 | 0.63 | 14.2 | -- | -- | -0.483 | -- | -- | 0.0293 | -- | 24 | 2595 | -- | -- |
| 201.24 | 0.662 | 14.3 | -- | -- | -- | -- | -- | -0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.16 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 16 |
| 5 | 23.45 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 19 |
| 27 | 24.35 | temperature | 20 | 90 | > th | dose independent | sin | 13 | NA |
| 36 | 24.57 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 4 |
| 40 | 24.61 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 6 |
| 57 | 24.95 | temperature | 20 | 720 | > th | dose independent | sin | 17 | NA |
| 124 | 25.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 19 |
| 138 | 25.64 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |
| 199 | 26.03 | temperature | 15 | 10 | > th | dose dependent | sin | 12 | NA |
| 205 | 26.08 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 13 |
| 246 | 26.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 4 |
| 299 | 26.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 15 |
| 321 | 26.62 | temperature | 30 | 720 | < th | dose dependent | sin | 14 | NA |
| 347 | 26.71 | temperature | 20 | 720 | < th | dose independent | sin | 15 | NA |
| 354 | 26.72 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 6 |
| 393 | 26.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 19 |
| 404 | 26.91 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 17 |
| 456 | 27.06 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 14 |
| 468 | 27.08 | radiation | 30 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 529 | 27.21 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 533 | 27.23 | temperature | 20 | 720 | < th | dose independent | rect. | 15 | 12 |
| 567 | 27.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 15 |
| 599 | 27.38 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 3 |
| 680 | 27.53 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 720 | 27.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 751 | 27.65 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 769 | 27.68 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 770 | 27.68 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 779 | 27.69 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 786 | 27.70 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 821 | 27.74 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 827 | 27.75 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 829 | 27.75 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 852 | 27.78 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 865 | 27.81 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 924 | 27.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 20 |
| 938 | 27.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 20 |
| 965 | 27.94 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 999 | 27.97 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 1 |