BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0501700 Os01g0501700|AK067297
         (359 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01110.1  | chr2:83786-85088 REVERSE LENGTH=341                370   e-103

>AT2G01110.1 | chr2:83786-85088 REVERSE LENGTH=341
          Length = 340

 Score =  370 bits (951), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/292 (67%), Positives = 213/292 (72%), Gaps = 8/292 (2%)

Query: 75  QREESPSGSLGAALEDPSPQPVQNGSFGGITED-------EEQSSLYNFLYPSKELLPDD 127
           QR     G + A  +D SP     G  G   ED       +  SS+Y FLYP KE LPDD
Sbjct: 50  QRRSKGFGPVSALNDDDSPTETTPG-VGSAVEDRPPDSSEDRSSSVYEFLYPRKEELPDD 108

Query: 128 KEMSIFDHLEELRDRIFVSVLAVGAAILGCFAYSKDLIRILEAPVSVQGVRFLQLSPGEF 187
           KEM+IFDHLEELR+RIFVSVLAVGAAILGCFA+SKDLI  LEAPV  QGVRFLQL+PGEF
Sbjct: 109 KEMTIFDHLEELRERIFVSVLAVGAAILGCFAFSKDLIVFLEAPVKTQGVRFLQLAPGEF 168

Query: 188 FFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRDERKFLGPIVLGSSVLFYLGIFFSYT 247
           FFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTR ER+FLGPIV GSS+LFY G+ FSY 
Sbjct: 169 FFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVFGSSLLFYAGLAFSYW 228

Query: 248 VLAPAALNFFVNYADGAVESLWSIDQYFEFVLVLLFSTGLSFQVPVIXXXXXXXXXXXXD 307
           VL PAALNFFVNYA+G VESLWSIDQYFEFVLVL+FSTGLSFQVPVI            D
Sbjct: 229 VLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGVVSGD 288

Query: 308 QMLSIWRYXXXXXXXXXXXLTPSTDPLTQMXXXXXXXXXXXXXAWMVKLTGR 359
           QMLSIWRY           +TPSTDP+TQM             AWMVKLTGR
Sbjct: 289 QMLSIWRYVVVGAVVAAAVVTPSTDPVTQMLLATPLLGLYLGGAWMVKLTGR 340



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.141    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,836,917
Number of extensions: 280042
Number of successful extensions: 903
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 903
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,364,969
Effective search space: 2166526971
Effective search space used: 2166526971
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)