Os01g0390300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os01g0390300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.9 | 0.435 | 7.56 | -1.48 | 0.767 | -0.426 | 0.627 | 1.44 | -0.175 | 8.24 | 20.54 | 106 | -- | -- |
| 94.76 | 0.453 | 7.54 | -1.69 | 0.727 | -0.572 | 0.949 | -- | -0.177 | 8.5 | 20.47 | 242 | -- | -- |
| 87.06 | 0.435 | 7.56 | -1.45 | 0.764 | -0.432 | -- | 1.48 | -0.173 | 8.37 | 20.5 | 106 | -- | -- |
| 93.6 | 0.451 | 7.58 | -1.59 | 0.72 | -0.793 | -- | -- | -0.201 | 8.48 | 19.6 | 232 | -- | -- |
| 117.79 | 0.505 | 7.56 | -1.49 | -- | -0.519 | -- | 1.25 | -0.151 | -- | 20.6 | 235 | -- | -- |
| 107.3 | 0.486 | 7.61 | -1.88 | 0.743 | -- | 0.824 | -- | -0.33 | 7.96 | -- | -- | -- | -- |
| 109.3 | 0.49 | 7.61 | -1.86 | 0.744 | -- | -- | -- | -0.331 | 7.89 | -- | -- | -- | -- |
| 119.21 | 0.509 | 7.59 | -1.53 | -- | -0.943 | -- | -- | -0.166 | -- | 19.6 | 425 | -- | -- |
| 154.13 | 0.578 | 7.56 | -- | 0.686 | -1.31 | -- | -- | 0.02 | 8.26 | 19.6 | 282 | -- | -- |
| 139.38 | 0.552 | 7.63 | -1.85 | -- | -- | -- | -- | -0.321 | -- | -- | -- | -- | -- |
| 200.48 | 0.662 | 7.56 | -- | 0.732 | -- | -- | -- | -0.124 | 8.07 | -- | -- | -- | -- |
| 158.23 | 0.586 | 7.52 | -- | -- | -1.86 | -- | -- | 0.159 | -- | 18.86 | 3453 | -- | -- |
| 229.83 | 0.708 | 7.58 | -- | -- | -- | -- | -- | -0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.42 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 3 | 83.43 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 7 | 85.99 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 22 |
| 13 | 86.23 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 17 |
| 18 | 86.38 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 21 |
| 20 | 86.40 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 21 | 86.43 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 23 |
| 36 | 86.77 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 17 |
| 38 | 86.84 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 18 |
| 41 | 86.91 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 18 |
| 47 | 87.00 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 22 |
| 50 | 87.02 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 20 |
| 63 | 87.20 | temperature | 20 | 90 | < th | dose independent | rect. | 18 | 23 |
| 64 | 87.26 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 67 | 87.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 82 | 87.46 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 84 | 87.47 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 91 | 87.48 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 92 | 87.48 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 93 | 87.49 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 99 | 87.49 | temperature | 20 | 90 | < th | dose independent | rect. | 8 | 23 |
| 105 | 87.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 106 | 87.53 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 23 |
| 109 | 87.58 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 111 | 87.58 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 23 |
| 114 | 87.60 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 116 | 87.61 | temperature | 20 | 10 | > th | dose independent | sin | 7 | NA |
| 121 | 87.62 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 23 |
| 125 | 87.66 | temperature | 20 | 90 | > th | dose independent | sin | 7 | NA |
| 136 | 87.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 145 | 87.78 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 22 |
| 148 | 87.79 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 23 |
| 155 | 87.82 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 21 |
| 180 | 87.93 | temperature | 20 | 10 | < th | dose independent | rect. | 15 | 23 |
| 198 | 87.98 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 201 | 87.99 | temperature | 20 | 10 | < th | dose independent | rect. | 13 | 23 |
| 206 | 88.00 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 207 | 88.01 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 215 | 88.02 | temperature | 20 | 10 | < th | dose independent | rect. | 9 | 23 |
| 216 | 88.02 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 219 | 88.03 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 23 |
| 223 | 88.05 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 23 |
| 224 | 88.05 | temperature | 20 | 10 | < th | dose independent | rect. | 11 | 23 |
| 268 | 88.14 | temperature | 20 | 90 | > th | dose independent | rect. | 22 | 23 |
| 289 | 88.18 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 23 |
| 328 | 88.35 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 345 | 88.43 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 23 |
| 381 | 88.54 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 23 |
| 389 | 88.57 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 397 | 88.60 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 23 |
| 417 | 88.67 | radiation | 10 | 1440 | < th | dose independent | sin | 18 | NA |
| 524 | 89.01 | temperature | 20 | 10 | > th | dose independent | rect. | 17 | 23 |
| 567 | 89.17 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 705 | 89.57 | temperature | 20 | 10 | > th | dose independent | rect. | 13 | 23 |
| 711 | 89.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 719 | 89.63 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 758 | 89.73 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 802 | 89.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 806 | 89.93 | temperature | 20 | 270 | < th | dose independent | sin | 9 | NA |
| 820 | 89.97 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 934 | 90.36 | temperature | 20 | 10 | < th | dose independent | sin | 7 | NA |
| 995 | 90.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 12 |