BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0390300 Os01g0390300|AK111646
(185 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14800.1 | chr1:5099572-5102558 FORWARD LENGTH=385 61 3e-10
AT5G08020.1 | chr5:2572107-2574879 FORWARD LENGTH=605 59 2e-09
AT2G06510.1 | chr2:2585215-2587601 FORWARD LENGTH=641 57 7e-09
AT2G05642.1 | chr2:2098253-2100867 REVERSE LENGTH=533 56 1e-08
AT4G19130.1 | chr4:10466618-10469092 REVERSE LENGTH=785 54 4e-08
AT5G61000.1 | chr5:24549682-24552641 REVERSE LENGTH=630 54 4e-08
>AT1G14800.1 | chr1:5099572-5102558 FORWARD LENGTH=385
Length = 384
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 3/163 (1%)
Query: 3 YVLISDLMYGDTDKRIKARVSRQWDYHDLNDETKIYHTDLVLLDEKGNSIHVQIYPPAMI 62
YV L G + +++ R+ R WD ++ + + L+LLDEK + IH I
Sbjct: 15 YVAFDALRLGRSTQQVVGRLLRFWDARNIKKDGQFMGIVLLLLDEKCSVIHAFIPAALAS 74
Query: 63 KLRTLLQEGKVYYFDSFSVRYANRTYRPVTNPLMISFTKWTTLEECIDAFDDFPAITFSL 122
R +L+EG ++ F V + Y+ +P ++ F TT+ E D F L
Sbjct: 75 HFRQVLREGIIFNVSGFEVGRCTKLYKITDHPFLLRFLPATTIIEVSDVGPTIEREKFML 134
Query: 123 TPFQDAPSLVDRNAFYVDIMGVITEIGATDTLRPKSRNTETLK 165
F + +L + N +++ G IT + ++ P S L+
Sbjct: 135 RNFDNLQALANTN---IELPGQITFVQGSNLNDPTSTQRLVLR 174
>AT5G08020.1 | chr5:2572107-2574879 FORWARD LENGTH=605
Length = 604
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 6/158 (3%)
Query: 18 IKARVSRQW---DYHDLNDETKIYHTDLVLLDEKGNSIHVQIYPPAMIKLRTLLQEGKVY 74
IK RV+ + Y + E +++ +L DE+G I ++ A K + GKVY
Sbjct: 172 IKVRVTNKGVMRTYKNARGEGCVFNVELT--DEEGTQIQATMFNAAARKFYDRFEMGKVY 229
Query: 75 YFDSFSVRYANRTYRPVTNPLMISFTKWTTLEECIDAFDDFPAITFSLTPFQDAPSLVDR 134
Y S++ AN+ ++ V N ++ + + +EE + P F+ P + + V++
Sbjct: 230 YISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFTPETKFNFVPIDELGTYVNQ 289
Query: 135 NAFYVDIMGVITEIGATDTLRPKSRNTETLKRTMQIWD 172
+D++GV+ + T ++R K+ N KR + + D
Sbjct: 290 KDL-IDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLAD 326
>AT2G06510.1 | chr2:2585215-2587601 FORWARD LENGTH=641
Length = 640
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 18 IKARVSRQWD---YHDLNDETKIYHTDLVLLDEKGNSIHVQIYPPAMIKLRTLLQEGKVY 74
IKARV+ + D Y++ + K++ DL LD G I V + + + + + GKVY
Sbjct: 212 IKARVTAKGDIRRYNNAKGDGKVFSFDL--LDYDGGEIRVTCFNALVDRFYDVTEVGKVY 269
Query: 75 YFDSFSVRYANRTYRPVTNPLMISFTKWTTLEECIDAFDDFPAITFSLTPFQDAPSLVDR 134
S++ A + + + N I +T+E C D P FS P D +
Sbjct: 270 LISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPISDIENA--E 327
Query: 135 NAFYVDIMGVITEIGATDTLRPKSRNTETLKRTMQIWDASN 175
N +D++GV+T + + + K+ ET +R + + D S
Sbjct: 328 NNTILDVIGVVTSVNPSVPILRKN-GMETHRRILNLKDESG 367
>AT2G05642.1 | chr2:2098253-2100867 REVERSE LENGTH=533
Length = 532
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 17 RIKARVSRQWDYHDLNDETKIYHTDLVLLDEKGNSIHVQIYPPAMIKLRTLLQEGKVYYF 76
++K R++R W YH + I DL+L+D+KG I I + K + L+EG Y
Sbjct: 19 KVKVRIARLWAYHKKDRPKDIMGIDLLLVDDKGERIQASIRSQLLSKFQEKLEEGDCYMI 78
Query: 77 DSFSVRYANRTYRPVTNPLMISFTKWT 103
+F + +YR ++P I+F T
Sbjct: 79 MNFEISDNGGSYRASSHPYKINFMSMT 105
>AT4G19130.1 | chr4:10466618-10469092 REVERSE LENGTH=785
Length = 784
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 8/161 (4%)
Query: 18 IKARVSRQW---DYHDLNDETKIYHTDLVLLDEKGNSIHVQIYPPAMIKLRTLLQEGKVY 74
IKARV+ + Y + E K+++ DL LD G I V + + + G +Y
Sbjct: 243 IKARVTNKAALKQYSNPRGEGKVFNFDL--LDADGGEIRVTCFNAVADQFYDQIVVGNLY 300
Query: 75 YFDSFSVRYANRTYRPVTNPLMISFTKWTTLEECIDAFDDFPAITFSLTPFQDAPSLVDR 134
S+R A + + + N I +T+++C + P F D S+
Sbjct: 301 LISRGSLRPAQKNFNHLRNDYEIMLDNASTIKQCYEEDAAIPRHQFHFRTIGDIESM--E 358
Query: 135 NAFYVDIMGVITEIGATDTLRPKSRNTETLKRTMQIWDASN 175
N VD++G+++ I T T+ K+ T T KR++Q+ D S
Sbjct: 359 NNCIVDVIGIVSSISPTVTITRKN-GTATPKRSLQLKDMSG 398
>AT5G61000.1 | chr5:24549682-24552641 REVERSE LENGTH=630
Length = 629
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 6/160 (3%)
Query: 18 IKARVSRQW---DYHDLNDETKIYHTDLVLLDEKGNSIHVQIYPPAMIKLRTLLQEGKVY 74
IK RV+ + +Y + E +++ +L DE+G I ++ A K Q GKVY
Sbjct: 196 IKVRVTNKGVMRNYKNARGEGCVFNVELT--DEEGTQIQATMFNDAARKFFDRFQLGKVY 253
Query: 75 YFDSFSVRYANRTYRPVTNPLMISFTKWTTLEECIDAFDDFPAITFSLTPFQDAPSLVDR 134
Y S++ AN+ ++ V N ++ + + +EE P F+ P ++ V++
Sbjct: 254 YISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASSEEMFIPETKFNFVPIEELGLYVNQ 313
Query: 135 NAFYVDIMGVITEIGATDTLRPKSRNTETLKRTMQIWDAS 174
+D++GV+ + T ++R ++ N KR + + D S
Sbjct: 314 KEL-IDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADES 352
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,063,673
Number of extensions: 163032
Number of successful extensions: 348
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 7
Length of query: 185
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 92
Effective length of database: 8,556,881
Effective search space: 787233052
Effective search space used: 787233052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)