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Os01g0377500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ania-6a type cyclin.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0087) R2 : 0.617
β1 : 0.71 (0.0319) R2dD : 0.432 R2D : 0.193
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.361 (0.0186) R2dN8 : 0.424 R2N8 : 0.185
σ : 0.163
deviance : 12.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
9.11 0.142 12.9 0.738 0.167 -0.0924 0.129 0.348 0.371 17.4 19.98 10 -- --
9.7 0.145 12.9 0.736 0.156 -0.133 0.291 -- 0.367 18.7 20 9 -- --
9.15 0.141 12.9 0.739 0.167 -0.0865 -- 0.337 0.37 17.2 19.98 9 -- --
9.74 0.145 12.9 0.721 0.171 -0.0877 -- -- 0.367 17.2 20 9 -- --
10.59 0.152 12.9 0.722 -- -0.113 -- 0.325 0.37 -- 19.45 8 -- --
9.91 0.148 12.9 0.722 0.199 -- -0.197 -- 0.367 15.5 -- -- -- --
10.01 0.148 12.9 0.718 0.201 -- -- -- 0.366 15.9 -- -- -- --
11.16 0.156 12.9 0.722 -- -0.113 -- -- 0.369 -- 19.46 8 -- --
23.09 0.224 12.9 -- 0.153 -0.0961 -- -- 0.284 16.9 20 4 -- --
12.22 0.163 12.9 0.71 -- -- -- -- 0.361 -- -- -- -- --
23.6 0.227 12.9 -- 0.187 -- -- -- 0.286 15.9 -- -- -- --
23.91 0.228 12.9 -- -- -0.143 -- -- 0.283 -- 20 448 -- --
25.51 0.236 12.9 -- -- -- -- -- 0.282 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 8.44 radiation 20.0 90 < th dose independent rect. 1 9
2 8.44 temperature 20.0 90 > th dose independent rect. 9 16
3 8.46 temperature 20.0 270 > th dose independent rect. 17 8
4 8.46 atmosphere 1015.0 90 < th dose independent rect. 9 16
5 8.47 humidity 50.0 270 > th dose independent rect. 12 18
6 8.48 temperature 10.0 270 > th dose dependent rect. 17 8
7 8.49 humidity 70.0 90 > th dose independent rect. 1 8
9 8.49 humidity 50.0 270 > th dose independent rect. 11 20
10 8.51 radiation 20.0 10 < th dose independent rect. 1 9
12 8.51 radiation 40.0 90 < th dose dependent rect. 1 9
16 8.52 atmosphere 1015.0 270 < th dose independent rect. 7 16
18 8.53 wind 1.0 270 > th dose independent rect. 23 8
20 8.53 temperature 20.0 10 > th dose independent rect. 9 16
21 8.54 precipitation 0.1 90 < th dose independent rect. 1 8
25 8.54 precipitation 0.1 90 < th dose dependent rect. 1 8
26 8.54 radiation 30.0 270 < th dose dependent rect. 23 9
28 8.55 humidity 50.0 270 > th dose independent rect. 1 16
35 8.56 radiation 10.0 270 < th dose independent rect. 23 9
36 8.56 atmosphere 995.0 270 > th dose independent rect. 7 16
37 8.56 wind 1.0 270 > th dose independent rect. 12 18
38 8.56 wind 1.0 270 > th dose independent rect. 11 20
42 8.57 wind 7.0 90 < th dose independent rect. 1 8
44 8.57 precipitation 0.1 270 < th dose independent rect. 23 8
50 8.57 precipitation 0.1 270 < th dose dependent rect. 23 8
52 8.58 temperature 10.0 90 > th dose independent rect. 1 8
54 8.58 temperature 20.0 10 > th dose independent rect. 18 8
56 8.58 humidity 70.0 270 > th dose independent rect. 23 8
57 8.58 atmosphere 995.0 90 > th dose independent rect. 1 8
58 8.58 atmosphere 1015.0 90 < th dose independent rect. 1 8
60 8.58 humidity 70.0 10 > th dose independent rect. 1 9
61 8.58 temperature 10.0 90 > th dose independent rect. 9 16
63 8.58 temperature 20.0 270 > th dose independent rect. 7 17
71 8.58 temperature 10.0 90 > th dose dependent rect. 9 16
72 8.59 temperature 30.0 270 < th dose independent rect. 7 4
73 8.59 wind 7.0 270 < th dose independent rect. 23 8
75 8.59 temperature 10.0 270 > th dose independent rect. 23 8
76 8.59 temperature 30.0 90 < th dose independent rect. 1 8
77 8.59 temperature 30.0 270 < th dose independent rect. 23 8
78 8.59 humidity 50.0 270 > th dose independent rect. 23 8
80 8.59 atmosphere 995.0 270 > th dose independent rect. 23 8
87 8.59 wind 1.0 270 > th dose independent rect. 7 16
88 8.59 temperature 10.0 270 > th dose independent rect. 7 16
90 8.59 precipitation 0.1 270 < th dose independent rect. 12 18
94 8.59 precipitation 0.1 270 < th dose dependent rect. 12 18
95 8.60 wind 1.0 270 > th dose independent rect. 7 4
100 8.60 wind 9.0 90 < th dose independent rect. 9 16
102 8.60 precipitation 0.1 270 < th dose independent rect. 11 20
104 8.60 precipitation 0.1 270 < th dose dependent rect. 11 20
105 8.61 temperature 30.0 270 < th dose independent rect. 6 6
106 8.61 humidity 50.0 270 > th dose independent rect. 11 9
109 8.61 wind 9.0 270 < th dose independent rect. 7 16
110 8.61 atmosphere 995.0 90 > th dose independent rect. 9 16
111 8.61 precipitation 0.1 270 < th dose independent rect. 7 16
112 8.61 precipitation 0.1 90 < th dose independent rect. 9 16
118 8.61 precipitation 0.1 270 < th dose dependent rect. 7 16
119 8.61 precipitation 0.1 90 < th dose dependent rect. 9 16
121 8.62 wind 9.0 270 < th dose independent rect. 7 4
122 8.62 temperature 10.0 270 > th dose independent rect. 7 4
123 8.62 humidity 50.0 270 > th dose independent rect. 7 4
124 8.62 atmosphere 995.0 270 > th dose independent rect. 7 4
125 8.62 atmosphere 1015.0 270 < th dose independent rect. 7 4
126 8.62 precipitation 0.1 270 < th dose independent rect. 7 4
127 8.62 temperature 10.0 270 > th dose independent rect. 6 6
128 8.62 atmosphere 995.0 270 > th dose independent rect. 6 6
129 8.62 atmosphere 1015.0 270 < th dose independent rect. 6 6
130 8.62 precipitation 0.1 270 < th dose independent rect. 6 6
137 8.62 temperature 10.0 270 > th dose independent rect. 12 18
138 8.62 temperature 10.0 270 > th dose independent rect. 11 20
139 8.62 precipitation 0.1 270 < th dose dependent rect. 7 4
140 8.62 precipitation 0.1 270 < th dose dependent rect. 6 6
142 8.63 wind 9.0 270 < th dose independent rect. 6 6
143 8.63 humidity 50.0 270 > th dose independent rect. 6 6
154 8.63 radiation 40.0 10 < th dose dependent rect. 1 9
168 8.64 wind 9.0 270 < th dose independent rect. 12 18
169 8.64 radiation 40.0 10 < th dose independent rect. 14 19
172 8.64 wind 9.0 270 < th dose independent rect. 11 20
175 8.64 wind 9.0 90 < th dose dependent rect. 1 8
199 8.65 humidity 50.0 10 > th dose independent rect. 14 19
209 8.66 radiation 1.0 270 > th dose independent rect. 6 6
219 8.66 precipitation 0.1 270 < th dose independent rect. 10 23
225 8.66 precipitation 0.1 270 < th dose dependent rect. 10 23
234 8.67 atmosphere 1015.0 270 < th dose independent rect. 23 8
235 8.67 radiation 1.0 270 > th dose independent rect. 4 8
245 8.67 wind 1.0 90 > th dose independent rect. 9 16
254 8.67 precipitation 0.1 10 < th dose independent rect. 14 19
257 8.67 humidity 50.0 90 > th dose dependent rect. 1 8
260 8.67 precipitation 0.1 10 < th dose dependent rect. 14 19
261 8.68 temperature 20.0 90 > th dose independent rect. 21 4
262 8.68 radiation 1.0 270 > th dose independent rect. 7 4
280 8.69 temperature 30.0 270 < th dose independent rect. 9 1
282 8.69 temperature 10.0 10 > th dose independent rect. 9 5
286 8.69 humidity 50.0 30 > th dose independent rect. 9 5
288 8.69 atmosphere 995.0 10 > th dose independent rect. 9 5
290 8.69 atmosphere 1015.0 10 < th dose independent rect. 9 5
293 8.69 precipitation 0.1 10 < th dose independent rect. 9 5
309 8.69 wind 1.0 270 > th dose independent rect. 11 10
320 8.69 temperature 10.0 10 > th dose independent rect. 14 19
327 8.69 precipitation 0.1 10 < th dose dependent rect. 9 5
333 8.70 wind 9.0 270 < th dose independent rect. 9 1
334 8.70 temperature 10.0 270 > th dose independent rect. 9 1
335 8.70 humidity 50.0 270 > th dose independent rect. 9 1
336 8.70 atmosphere 995.0 270 > th dose independent rect. 9 1
337 8.70 atmosphere 1015.0 270 < th dose independent rect. 9 1
338 8.70 precipitation 0.1 270 < th dose independent rect. 9 1
345 8.70 wind 1.0 30 > th dose independent rect. 9 5
346 8.70 temperature 10.0 1440 > th dose independent rect. 10 5
353 8.70 precipitation 0.1 10 < th dose independent rect. 1 8
361 8.70 temperature 30.0 270 < th dose independent rect. 21 14
368 8.70 atmosphere 995.0 270 > th dose independent rect. 12 18
369 8.70 wind 9.0 10 < th dose independent rect. 14 19
371 8.70 temperature 10.0 1440 > th dose independent rect. 15 19
375 8.70 atmosphere 995.0 270 > th dose independent rect. 11 20
377 8.70 temperature 10.0 270 > th dose independent rect. 10 23
378 8.70 radiation 10.0 270 < th dose dependent sin 6 NA
379 8.70 precipitation 0.1 270 < th dose dependent rect. 9 1
382 8.70 precipitation 0.1 10 < th dose dependent rect. 1 8
408 8.71 atmosphere 1010.0 270 < th dose independent rect. 17 8
434 8.71 temperature 10.0 10 > th dose dependent rect. 18 9
446 8.72 radiation 1.0 10 > th dose independent rect. 9 5
463 8.72 humidity 50.0 270 > th dose independent rect. 21 14
476 8.72 temperature 30.0 30 < th dose independent rect. 14 19
478 8.72 atmosphere 995.0 10 > th dose independent rect. 14 19
486 8.72 temperature 10.0 90 > th dose dependent rect. 1 8
496 8.73 radiation 10.0 30 > th dose independent rect. 9 3
499 8.73 atmosphere 995.0 1440 > th dose independent rect. 10 5
518 8.73 temperature 10.0 270 > th dose independent rect. 11 10
519 8.73 precipitation 0.1 270 < th dose independent rect. 11 10
520 8.73 temperature 10.0 270 > th dose independent rect. 21 14
521 8.73 atmosphere 995.0 270 > th dose independent rect. 21 14
542 8.73 precipitation 0.1 270 < th dose dependent rect. 11 10
561 8.74 wind 9.0 10 < th dose independent rect. 9 5
565 8.74 temperature 30.0 90 < th dose independent rect. 9 5
582 8.74 temperature 10.0 1440 > th dose independent rect. 2 8
585 8.74 atmosphere 995.0 1440 > th dose independent rect. 2 8
595 8.74 precipitation 0.1 270 < th dose independent rect. 21 14
602 8.74 temperature 10.0 1440 > th dose independent rect. 10 16
624 8.74 precipitation 0.1 270 < th dose dependent rect. 21 14
628 8.75 radiation 20.0 10 < th dose independent sin 6 NA
637 8.75 temperature 20.0 10 > th dose independent rect. 21 5
659 8.75 wind 9.0 270 < th dose independent rect. 21 14
689 8.75 radiation 10.0 270 < th dose dependent rect. 23 18
691 8.76 wind 1.0 270 > th dose independent rect. 9 1
712 8.76 precipitation 0.1 270 < th dose independent rect. 1 14
733 8.76 precipitation 0.1 270 < th dose dependent rect. 1 14
737 8.76 atmosphere 995.0 10 > th dose dependent rect. 14 19
774 8.77 atmosphere 1015.0 270 < th dose independent rect. 11 9
777 8.77 wind 9.0 270 < th dose independent rect. 15 10
796 8.77 wind 9.0 10 < th dose dependent rect. 1 8
799 8.77 humidity 50.0 270 > th dose dependent rect. 23 8
848 8.78 atmosphere 995.0 270 > th dose independent rect. 15 10
858 8.78 humidity 50.0 10 > th dose independent rect. 14 17
866 8.78 radiation 20.0 10 < th dose independent rect. 15 19
884 8.78 atmosphere 995.0 270 > th dose dependent rect. 23 8
896 8.78 radiation 40.0 10 < th dose dependent rect. 14 20
901 8.79 temperature 10.0 1440 > th dose independent rect. 10 3
905 8.79 atmosphere 995.0 1440 > th dose independent rect. 10 3
924 8.79 wind 9.0 270 < th dose independent rect. 11 10
931 8.79 wind 9.0 270 < th dose independent rect. 1 14
932 8.79 temperature 15.0 270 > th dose independent rect. 1 14
933 8.79 atmosphere 1015.0 270 < th dose independent rect. 21 14
947 8.79 precipitation 0.1 10 < th dose independent rect. 14 17
956 8.79 temperature 10.0 1440 > th dose independent rect. 13 21
975 8.79 precipitation 0.1 10 < th dose dependent rect. 14 17