Os01g0376700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Sucrose-phosphatase (EC 3.1.3.24).
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Os01g0376700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Sucrose-phosphatase (EC 3.1.3.24).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190.09 | 0.648 | 8.99 | -4.06 | 0.71 | -1.12 | -0.353 | 2.75 | -1.81 | 7.55 | 20 | 1442 | -- | -- |
| 208.47 | 0.672 | 8.99 | -3.87 | 0.71 | -1.12 | -0.333 | -- | -1.81 | 7.55 | 19.98 | 1441 | -- | -- |
| 190.39 | 0.643 | 8.99 | -4.06 | 0.71 | -1.12 | -- | 2.75 | -1.81 | 7.43 | 20 | 1442 | -- | -- |
| 208.73 | 0.673 | 9 | -3.87 | 0.713 | -1.11 | -- | -- | -1.81 | 7.61 | 19.99 | 1441 | -- | -- |
| 217.49 | 0.687 | 8.99 | -4.07 | -- | -1.12 | -- | 2.77 | -1.81 | -- | 19.97 | 1442 | -- | -- |
| 251.06 | 0.743 | 8.93 | -3.78 | 0.709 | -- | -0.285 | -- | -1.5 | 7.33 | -- | -- | -- | -- |
| 251.26 | 0.742 | 8.93 | -3.79 | 0.71 | -- | -- | -- | -1.5 | 7.22 | -- | -- | -- | -- |
| 235.9 | 0.715 | 9 | -3.86 | -- | -1.08 | -- | -- | -1.81 | -- | 19.99 | 1447 | -- | -- |
| 533.51 | 1.08 | 8.96 | -- | 0.807 | -1.71 | -- | -- | -1.52 | 6.89 | 19.86 | 6738 | -- | -- |
| 277.95 | 0.779 | 8.94 | -3.78 | -- | -- | -- | -- | -1.49 | -- | -- | -- | -- | -- |
| 629.65 | 1.17 | 8.83 | -- | 0.675 | -- | -- | -- | -1.08 | 7.58 | -- | -- | -- | -- |
| 308.44 | 0.818 | 8.64 | -- | -- | -3.13 | -- | -- | -0.922 | -- | 59.58 | 34715 | -- | -- |
| 654.1 | 1.19 | 8.85 | -- | -- | -- | -- | -- | -1.07 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.46 | radiation | 30 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 10 | 186.27 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 14 | 186.81 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 16 | 186.95 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 20 | 187.28 | radiation | 20 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 23 | 187.33 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 27 | 187.35 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 29 | 187.37 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 39 | 187.50 | radiation | 10 | 1440 | < th | dose dependent | sin | 23 | NA |
| 42 | 187.64 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 46 | 187.68 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 49 | 187.72 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 93 | 188.69 | radiation | 20 | 1440 | < th | dose independent | sin | 23 | NA |
| 106 | 188.83 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 142 | 189.10 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 195 | 190.06 | radiation | 20 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 201 | 190.07 | radiation | 20 | 1440 | < th | dose independent | rect. | 19 | 22 |
| 209 | 190.08 | radiation | 20 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 212 | 190.09 | radiation | 20 | 1440 | < th | dose independent | rect. | 24 | 20 |
| 228 | 190.10 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 22 |
| 231 | 190.11 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 289 | 190.16 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 310 | 190.64 | radiation | 10 | 1440 | < th | dose dependent | rect. | 22 | 19 |
| 313 | 190.65 | radiation | 20 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 320 | 190.66 | radiation | 20 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 332 | 190.69 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 343 | 190.73 | radiation | 10 | 1440 | < th | dose dependent | rect. | 3 | 14 |
| 402 | 190.98 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 410 | 191.08 | radiation | 10 | 1440 | < th | dose dependent | rect. | 22 | 22 |
| 421 | 191.12 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 447 | 191.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 3 | 17 |
| 490 | 191.29 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 508 | 191.45 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 575 | 191.59 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 580 | 191.71 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 696 | 192.79 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 710 | 193.12 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 751 | 193.91 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 10 |
| 752 | 193.91 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 12 |
| 758 | 193.93 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 5 |