Os01g0359800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os01g0359800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 142.61 | 0.561 | 3.29 | -0.616 | 0.753 | 2.01 | 1.2 | -17.4 | 0.0894 | 19.4 | 30.8 | 15 | -- | -- |
| 170.31 | 0.612 | 3.18 | 0.433 | 0.722 | 0.312 | 1.21 | -- | 0.082 | 19.5 | 30.8 | 15 | -- | -- |
| 146.37 | 0.568 | 3.29 | -0.632 | 0.756 | 2.04 | -- | -17.5 | 0.0922 | 19.3 | 30.8 | 15 | -- | -- |
| 173.67 | 0.614 | 3.18 | 0.398 | 0.706 | 0.354 | -- | -- | 0.0916 | 19.4 | 30.29 | 23 | -- | -- |
| 176.04 | 0.618 | 3.26 | -0.62 | -- | 2.11 | -- | -16.6 | 0.0922 | -- | 30.72 | 16 | -- | -- |
| 172.64 | 0.616 | 3.18 | 0.459 | 0.756 | -- | 1.26 | -- | 0.0605 | 19.2 | -- | -- | -- | -- |
| 176.85 | 0.623 | 3.18 | 0.434 | 0.762 | -- | -- | -- | 0.0638 | 19.1 | -- | -- | -- | -- |
| 197.79 | 0.655 | 3.15 | 0.333 | -- | 0.526 | -- | -- | 0.0711 | -- | 29.89 | 55 | -- | -- |
| 177.42 | 0.62 | 3.18 | -- | 0.689 | 0.34 | -- | -- | 0.0643 | 19.4 | 29.82 | 43 | -- | -- |
| 207.41 | 0.673 | 3.17 | 0.419 | -- | -- | -- | -- | 0.05 | -- | -- | -- | -- | -- |
| 181.81 | 0.631 | 3.19 | -- | 0.757 | -- | -- | -- | 0.0155 | 19.1 | -- | -- | -- | -- |
| 200.92 | 0.66 | 3.17 | -- | -- | 0.567 | -- | -- | 0.0501 | -- | 29.88 | 55 | -- | -- |
| 212.04 | 0.68 | 3.18 | -- | -- | -- | -- | -- | 0.00355 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.44 | temperature | 30 | 90 | > th | dose independent | rect. | 11 | 2 |
| 2 | 141.98 | temperature | 30 | 10 | > th | dose dependent | rect. | 11 | 2 |
| 5 | 142.61 | temperature | 30 | 10 | > th | dose dependent | rect. | 18 | 19 |
| 6 | 142.67 | temperature | 30 | 10 | > th | dose independent | rect. | 11 | 1 |
| 31 | 143.64 | temperature | 30 | 90 | > th | dose independent | rect. | 18 | 19 |
| 123 | 145.01 | temperature | 30 | 30 | > th | dose independent | sin | 6 | NA |
| 141 | 145.31 | temperature | 30 | 10 | > th | dose dependent | sin | 7 | NA |
| 260 | 148.77 | temperature | 30 | 30 | < th | dose independent | sin | 5 | NA |
| 275 | 149.66 | temperature | 30 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 407 | 151.69 | temperature | 30 | 30 | > th | dose independent | no | NA | NA |
| 684 | 153.85 | temperature | 30 | 10 | > th | dose dependent | no | NA | NA |
| 826 | 154.33 | temperature | 30 | 30 | < th | dose independent | no | NA | NA |