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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0348900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SalT gene product (Salt-induced protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.53 (0.0743) R2 : 0.719
β1 : -11 (0.387) R2dD : 1.26 R2D : 0.3
β2 : 1.57 (0.175) R2dC : 0.0512 R2C : -0.0362
β3 : 1.41 (0.436) R2dE : 0.0159 R2E : -0.0642
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 17.1 (1.68) R2dD*E : 0.304 R2D*E : -0.686
γ1 : -2.02 (0.154) R2dN8 : 0.16 R2N8 : -0.0704
σ : 1.26
deviance : 731.93
__
_____
C
peak time of C : 6.85
E
wheather : radiation
threshold : 0.1629
memory length : 4312
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 3.97
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
723.87 1.26 6.53 -11.1 1.59 1.38 1.96 16.8 -2.01 6.99 0.1685 4323 4.23 --
925.45 1.42 6.21 -7.39 1.94 1.35 0.416 -- -1.3 6.27 221.1 1421 0.438 --
731.93 1.26 6.53 -11 1.57 1.41 -- 17.1 -2.02 6.85 0.1629 4312 3.97 --
875.13 1.38 5.93 -7.89 1.62 1.02 -- -- -1.18 6.45 20.05 21584 2.86 --
864.06 1.37 6.53 -10.9 -- 1.39 -- 17.1 -1.94 -- 0.1698 4304 4.09 --
966.17 1.46 6.17 -7.58 1.53 -- 1.86 -- -1.34 7.17 -- -- -- --
975.31 1.46 6.17 -7.54 1.54 -- -- -- -1.35 7.11 -- -- -- --
882.18 1.38 6.12 -8.11 -- 2.41 -- -- -1.19 -- 10 16437 2.59 --
2226.17 2.2 5.82 -- 1.05 3.31 -- -- 0.0737 6.49 13.71 18229 0.115 --
1100.08 1.55 6.21 -7.51 -- -- -- -- -1.32 -- -- -- -- --
2475.01 2.33 5.98 -- 1.46 -- -- -- -0.506 7.44 -- -- -- --
1185.63 1.6 5.6 -- -- 6.95 -- -- 1.31 -- 4.011 47520 0.000216 --
2589.33 2.38 6.02 -- -- -- -- -- -0.485 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 652.96 humidity 90 14400 < th dose independent rect. 23 4
2 653.29 humidity 90 14400 < th dose independent rect. 22 6
9 664.37 humidity 90 14400 > th dose independent rect. 22 8
11 665.35 humidity 90 14400 > th dose independent rect. 23 4
24 672.61 humidity 90 14400 > th dose independent rect. 1 1
41 683.71 humidity 80 14400 > th dose dependent rect. 24 1
50 690.68 wind 1 43200 < th dose independent rect. 2 1
56 692.35 temperature 15 43200 > th dose dependent rect. 23 13
67 692.48 temperature 15 43200 > th dose dependent rect. 1 1
102 692.80 temperature 15 43200 > th dose dependent sin 7 NA
118 692.93 temperature 15 43200 > th dose dependent rect. 6 1
202 693.67 humidity 80 14400 > th dose dependent rect. 23 4
210 693.81 temperature 15 43200 > th dose dependent rect. 10 2
385 695.09 temperature 30 43200 < th dose dependent rect. 24 10
406 695.18 temperature 30 43200 < th dose dependent rect. 24 1
414 695.20 temperature 30 43200 < th dose dependent rect. 6 3
419 695.23 temperature 30 43200 < th dose dependent rect. 6 1
552 695.76 temperature 15 43200 > th dose dependent no NA NA
564 695.84 temperature 30 43200 < th dose dependent rect. 21 5
571 695.86 temperature 15 43200 > th dose dependent rect. 10 23
572 695.87 temperature 30 43200 < th dose dependent sin 8 NA
574 695.87 temperature 15 43200 > th dose dependent rect. 5 23
588 695.89 temperature 15 43200 > th dose dependent rect. 8 23
828 696.78 temperature 30 43200 < th dose dependent rect. 21 1