BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0348900 Os01g0348900|AK062520
         (145 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73040.1  | chr1:27475159-27475777 REVERSE LENGTH=177           45   9e-06

>AT1G73040.1 | chr1:27475159-27475777 REVERSE LENGTH=177
          Length = 176

 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 8/144 (5%)

Query: 4   VKIGPWGGNGGSAQDISVPP--KKLLGVTIYSSDAIRSIAFNYIGVDGQEYAIGPWGGGE 61
           V +GPWGGNGG+  D  +    +++  V  +  D+I S+ ++  G   +    G  GG +
Sbjct: 13  VFVGPWGGNGGTTWDDGIYDGVREIRLVYDHCIDSI-SVIYDKNGKPAKSEKHGGVGGNK 71

Query: 62  GTSTEIKLGSSEQ-IKEISGTHGPVYDLADIVTYLKIVTSANNTY-EAGVPNGKEFSIPL 119
             ++EIKL   E+ +  +SG + P+ +    V       S    Y   GV  G  F+  +
Sbjct: 72  --TSEIKLQYPEEYLTGVSGYYCPMVNSGTPVIRSMTFKSNKQVYGPYGVEQGTPFTFSV 129

Query: 120 QDSGHVVGFFGRSGTLIDAIGIYV 143
            + G +VG  GRSG  +D+IG ++
Sbjct: 130 -NGGRIVGMNGRSGWYLDSIGFHL 152



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,330,915
Number of extensions: 136838
Number of successful extensions: 338
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 7
Length of query: 145
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 56
Effective length of database: 8,666,545
Effective search space: 485326520
Effective search space used: 485326520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 107 (45.8 bits)