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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0337500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to H+-pyrophosphatase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.51 (0.0423) R2 : 0.302
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.762 (0.109) R2dC : 0.0755 R2C : 0.0514
β3 : 2.24 (0.178) R2dE : 0.265 R2E : 0.22
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.135 (0.0924) R2dN8 : 0.00507 R2N8 : -0.0146
σ : 0.786
deviance : 284.47
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_____
C
peak time of C : 4.79
E
wheather : radiation
threshold : 8.236
memory length : 1464
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 13.4
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
262.1 0.761 3.51 0.682 0.762 2.4 -1.82 1.28 0.209 5.11 4.347 1473 15.9 --
264.19 0.757 3.5 0.79 0.749 2.32 -1.8 -- 0.236 5.05 4.926 1471 16 --
269.86 0.765 3.51 0.661 0.751 2.49 -- 1.6 0.21 4.61 4.126 1469 16 --
272.21 0.768 3.49 0.784 0.729 2.26 -- -- 0.248 4.66 5.205 1465 15.8 --
296.39 0.802 3.5 0.764 -- 2.48 -- 0.945 0.252 -- 4.267 1410 15.4 --
363.46 0.894 3.59 0.507 0.659 -- -2.1 -- -0.167 4.81 -- -- -- --
374.35 0.906 3.58 0.513 0.646 -- -- -- -0.157 4.22 -- -- -- --
296.19 0.802 3.5 0.767 -- 2.36 -- -- 0.244 -- 5.47 1405 14.8 --
284.47 0.786 3.51 -- 0.762 2.24 -- -- 0.135 4.79 8.236 1464 13.4 --
396.93 0.931 3.59 0.539 -- -- -- -- -0.14 -- -- -- -- --
381.29 0.913 3.6 -- 0.656 -- -- -- -0.214 4.2 -- -- -- --
307.26 0.816 3.53 -- -- 2.34 -- -- 0.13 -- 8.413 1391 13.5 --
404.6 0.939 3.6 -- -- -- -- -- -0.2 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 261.90 radiation 1 1440 < th dose dependent rect. 11 6
8 268.53 radiation 1 1440 > th dose independent rect. 11 6
9 268.65 radiation 1 1440 < th dose independent rect. 11 6
18 270.80 humidity 90 720 > th dose dependent rect. 20 4
20 271.55 radiation 1 1440 < th dose independent rect. 11 18
21 271.57 radiation 1 1440 < th dose independent rect. 11 16
23 271.66 radiation 1 1440 < th dose independent rect. 11 11
33 271.92 radiation 10 1440 < th dose dependent rect. 10 17
34 271.94 radiation 10 1440 < th dose dependent rect. 10 12
81 272.51 radiation 10 1440 < th dose dependent rect. 12 15
84 272.54 radiation 10 1440 < th dose dependent rect. 12 10
114 272.92 radiation 1 1440 < th dose independent sin 21 NA
141 274.11 radiation 10 1440 < th dose dependent sin 19 NA
148 274.48 radiation 1 1440 > th dose independent rect. 11 18
177 274.90 humidity 90 720 > th dose dependent rect. 22 1
240 275.78 radiation 1 1440 > th dose independent sin 21 NA
264 276.76 humidity 60 1440 > th dose dependent rect. 12 19
266 276.87 humidity 80 1440 > th dose independent rect. 12 10
294 277.49 humidity 90 720 > th dose independent rect. 20 4
381 279.65 humidity 80 1440 < th dose independent rect. 12 9
441 280.43 humidity 60 1440 > th dose dependent sin 16 NA
467 280.83 radiation 1 1440 < th dose independent rect. 11 1
468 280.83 radiation 1 1440 < th dose dependent rect. 11 1
507 281.14 humidity 60 720 > th dose dependent rect. 18 8
572 281.90 humidity 90 720 > th dose dependent rect. 10 15
578 281.93 humidity 90 1440 < th dose dependent rect. 13 18
634 282.40 humidity 90 720 > th dose independent rect. 17 8
663 282.63 humidity 90 720 > th dose independent rect. 6 18
680 282.83 humidity 80 1440 > th dose independent sin 20 NA
760 283.47 humidity 90 720 > th dose independent rect. 15 10
861 284.37 humidity 90 1440 < th dose dependent sin 15 NA
906 284.75 humidity 80 1440 > th dose independent rect. 12 20
914 284.83 humidity 90 720 < th dose independent rect. 20 4
924 284.97 humidity 80 1440 > th dose independent rect. 12 22