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Os01g0328300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.38 (0.022) R2 : 0.648
β1 : 0.968 (0.0806) R2dD : 0.115 R2D : 0.0935
β2 : 0.513 (0.0543) R2dC : 0.0774 R2C : 0.16
β3 : -1.46 (0.0679) R2dE : 0.391 R2E : 0.46
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00263 (0.047) R2dN8 : 8.55e-07 R2N8 : -0.000157
σ : 0.411
deviance : 77.95
__
_____
C
peak time of C : 13.1
E
wheather : temperature
threshold : 24.94
memory length : 277
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.17
open length of G : 4.55

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
77.8 0.414 8.38 0.959 0.516 -1.46 -0.165 -0.447 -0.00164 13 24.92 272 1.12 4.73
78.05 0.411 8.38 0.98 0.524 -1.45 -0.138 -- 0.00418 12.9 24.9 276 1.12 4.72
77.67 0.41 8.38 0.95 0.513 -1.46 -- -0.4 -0.00195 13 24.91 277 1.19 4.6
77.95 0.411 8.38 0.968 0.513 -1.46 -- -- 0.00263 13.1 24.94 277 1.17 4.55
93.64 0.451 8.37 0.904 -- -1.6 -- -0.417 -0.00518 -- 25 276 1.16 4.6
116.38 0.506 8.39 0.934 1.24 -- 0.377 -- 0.07 16.1 -- -- -- --
116.78 0.506 8.39 0.938 1.24 -- -- -- 0.0721 16.1 -- -- -- --
94.02 0.452 8.38 0.908 -- -1.6 -- -- -0.00408 -- 24.9 276 1.17 4.6
102.76 0.472 8.39 -- 0.537 -1.43 -- -- -0.0744 13 24.9 277 1.21 4.63
200.63 0.662 8.38 0.888 -- -- -- -- 0.039 -- -- -- -- --
139.99 0.553 8.41 -- 1.22 -- -- -- -0.0324 16.1 -- -- -- --
117.94 0.506 8.38 -- -- -1.6 -- -- -0.00882 -- 25 275 1.17 4.3
221.43 0.695 8.4 -- -- -- -- -- -0.0596 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 78.20 temperature 25.0 270 < th dose independent rect. 1 5
2 78.41 temperature 25.0 270 < th dose independent rect. 3 2
3 78.97 wind 9.0 270 < th dose independent rect. 7 18
5 79.07 wind 9.0 270 < th dose independent rect. 6 20
6 79.26 precipitation 0.1 270 < th dose independent rect. 1 6
7 79.26 precipitation 0.1 270 < th dose dependent rect. 1 6
8 79.29 wind 9.0 270 < th dose independent rect. 5 22
9 79.37 precipitation 0.1 270 < th dose independent rect. 2 4
10 79.37 precipitation 0.1 270 < th dose dependent rect. 2 4
11 79.60 radiation 10.0 270 < th dose independent rect. 1 6
12 79.61 radiation 20.0 270 < th dose dependent rect. 1 6
16 79.67 radiation 20.0 90 < th dose independent rect. 3 6
18 79.84 precipitation 0.1 270 < th dose independent rect. 3 2
19 79.84 wind 5.0 270 < th dose independent rect. 2 4
20 79.84 precipitation 0.1 270 < th dose dependent rect. 3 2
23 79.94 wind 7.0 270 < th dose independent rect. 1 6
26 80.10 humidity 70.0 270 > th dose independent rect. 1 6
31 80.30 temperature 10.0 270 > th dose independent rect. 1 6
34 80.30 humidity 50.0 270 > th dose independent rect. 1 6
36 80.30 atmosphere 995.0 270 > th dose independent rect. 1 6
37 80.30 atmosphere 1015.0 270 < th dose independent rect. 1 6
39 80.30 temperature 10.0 270 > th dose independent rect. 7 18
40 80.33 atmosphere 1010.0 270 < th dose independent rect. 2 4
42 80.47 radiation 40.0 90 < th dose dependent rect. 3 6
44 80.50 temperature 10.0 270 > th dose independent rect. 2 4
47 80.50 humidity 50.0 270 > th dose independent rect. 2 4
50 80.50 atmosphere 995.0 270 > th dose independent rect. 2 4
52 80.50 radiation 20.0 270 < th dose independent rect. 2 4
55 80.50 temperature 10.0 270 > th dose independent rect. 6 20
58 80.56 radiation 40.0 270 < th dose dependent rect. 2 4
68 80.83 wind 5.0 270 < th dose independent rect. 3 2
94 81.30 temperature 10.0 270 > th dose independent rect. 3 2
97 81.30 humidity 50.0 270 > th dose independent rect. 3 2
100 81.30 atmosphere 995.0 270 > th dose independent rect. 3 2
101 81.30 atmosphere 1010.0 270 < th dose independent rect. 3 2
103 81.30 radiation 20.0 270 < th dose independent rect. 3 2
106 81.30 temperature 10.0 270 > th dose independent rect. 5 22
107 81.32 radiation 40.0 270 < th dose dependent rect. 3 2
110 81.38 radiation 1.0 270 < th dose independent rect. 3 2
114 81.48 precipitation 0.1 270 < th dose independent rect. 7 18
116 81.48 precipitation 0.1 270 < th dose dependent rect. 7 18
123 81.75 wind 1.0 270 > th dose independent rect. 1 6
125 81.78 precipitation 0.1 270 < th dose independent rect. 14 16
126 81.78 precipitation 0.1 270 < th dose dependent rect. 14 16
132 81.92 wind 9.0 270 < th dose independent rect. 6 8
133 81.92 precipitation 0.1 270 < th dose independent rect. 6 20
134 81.92 precipitation 0.1 270 < th dose dependent rect. 6 20
137 82.00 humidity 70.0 90 > th dose independent rect. 3 6
150 82.26 wind 9.0 270 < th dose dependent rect. 2 4
152 82.28 radiation 1.0 270 < th dose dependent rect. 5 21
153 82.29 temperature 10.0 270 > th dose independent rect. 6 8
154 82.29 atmosphere 995.0 270 > th dose independent rect. 6 8
155 82.29 atmosphere 1015.0 270 < th dose independent rect. 6 8
156 82.29 temperature 10.0 270 > th dose independent rect. 14 16
157 82.29 precipitation 0.1 270 < th dose independent rect. 2 16
158 82.29 precipitation 0.1 270 < th dose dependent rect. 2 16
161 82.34 precipitation 0.1 270 < th dose independent rect. 6 8
162 82.34 precipitation 0.1 270 < th dose dependent rect. 6 8
163 82.35 wind 9.0 270 < th dose dependent rect. 3 2
180 82.62 radiation 40.0 270 < th dose independent rect. 14 16
181 82.64 wind 7.0 270 < th dose independent rect. 18 8
189 82.79 radiation 1.0 270 < th dose dependent rect. 18 8
193 82.84 wind 9.0 270 < th dose dependent rect. 1 6
203 83.02 temperature 15.0 270 > th dose independent rect. 2 16
212 83.11 radiation 1.0 270 < th dose independent rect. 18 8
228 83.20 humidity 60.0 270 > th dose independent rect. 18 8
238 83.28 temperature 10.0 270 > th dose independent rect. 18 8
244 83.28 atmosphere 995.0 270 > th dose independent rect. 14 16
245 83.28 atmosphere 1015.0 270 < th dose independent rect. 2 16
246 83.28 humidity 50.0 270 > th dose dependent rect. 3 2
248 83.30 humidity 50.0 270 > th dose dependent rect. 2 4
264 83.37 humidity 50.0 90 > th dose dependent rect. 3 6
299 83.64 atmosphere 995.0 270 > th dose independent rect. 18 8
307 83.77 temperature 30.0 270 < th dose independent rect. 18 8
309 83.77 humidity 50.0 270 > th dose dependent rect. 1 6
310 83.78 radiation 1.0 270 < th dose dependent rect. 15 11
320 83.83 wind 9.0 270 < th dose independent rect. 14 16
328 83.85 atmosphere 995.0 270 > th dose independent rect. 2 16
346 84.02 precipitation 0.1 10 < th dose independent rect. 3 6
347 84.02 precipitation 0.1 10 < th dose dependent rect. 3 6
386 84.25 humidity 50.0 270 > th dose dependent rect. 18 7
392 84.31 precipitation 0.1 270 < th dose independent rect. 18 8
394 84.31 precipitation 0.1 270 < th dose dependent rect. 18 8
396 84.34 humidity 50.0 270 > th dose independent rect. 6 7
398 84.35 wind 9.0 270 < th dose dependent rect. 7 18
405 84.48 radiation 1.0 270 < th dose independent rect. 6 20
410 84.50 wind 9.0 10 < th dose dependent rect. 3 6
419 84.58 temperature 10.0 270 > th dose dependent rect. 2 4
431 84.71 precipitation 0.1 270 < th dose independent rect. 5 22
432 84.71 precipitation 0.1 270 < th dose dependent rect. 5 22
447 84.81 humidity 50.0 270 > th dose independent rect. 6 19
449 84.84 temperature 30.0 270 < th dose dependent rect. 3 2
471 84.96 radiation 10.0 10 < th dose independent rect. 4 18
489 85.04 wind 5.0 10 < th dose independent rect. 3 6
494 85.06 wind 9.0 10 < th dose independent rect. 9 18
499 85.10 wind 1.0 270 > th dose independent rect. 3 1
500 85.12 radiation 30.0 10 < th dose independent rect. 3 6
526 85.18 wind 9.0 270 < th dose independent rect. 2 16
548 85.22 wind 1.0 270 > th dose independent rect. 7 18
558 85.27 atmosphere 995.0 270 > th dose independent rect. 7 18
620 85.59 temperature 10.0 270 > th dose dependent rect. 3 2
624 85.61 precipitation 0.1 10 < th dose independent rect. 9 18
625 85.61 precipitation 0.1 10 < th dose dependent rect. 9 18
629 85.63 temperature 10.0 10 > th dose independent rect. 3 6
631 85.63 temperature 30.0 10 < th dose independent rect. 3 6
632 85.63 humidity 50.0 10 > th dose independent rect. 3 6
634 85.63 atmosphere 995.0 10 > th dose independent rect. 3 6
635 85.63 atmosphere 1015.0 10 < th dose independent rect. 3 6
638 85.63 temperature 10.0 10 > th dose independent rect. 9 18
693 85.94 temperature 30.0 270 < th dose dependent rect. 1 5
699 85.97 atmosphere 995.0 270 > th dose dependent rect. 2 4
704 86.01 radiation 40.0 90 < th dose dependent rect. 3 16
708 86.04 atmosphere 1015.0 270 < th dose independent rect. 7 18
710 86.04 temperature 10.0 270 > th dose dependent rect. 1 6
758 86.42 wind 9.0 270 < th dose dependent rect. 18 7
762 86.45 radiation 40.0 10 < th dose dependent rect. 4 18
781 86.54 temperature 30.0 90 < th dose dependent rect. 3 5
788 86.60 radiation 1.0 270 > th dose independent rect. 6 7
789 86.60 atmosphere 995.0 270 > th dose dependent rect. 3 2
811 86.74 radiation 40.0 10 < th dose dependent rect. 4 16
831 86.81 atmosphere 1010.0 270 < th dose independent rect. 11 9
836 86.83 radiation 20.0 90 < th dose independent rect. 3 16
848 86.88 temperature 15.0 270 > th dose independent rect. 11 10
855 86.89 radiation 20.0 90 < th dose independent rect. 3 18
897 87.03 humidity 50.0 90 > th dose dependent rect. 21 6
904 87.06 radiation 40.0 10 < th dose dependent rect. 4 5
909 87.10 atmosphere 1015.0 270 < th dose independent rect. 13 17
910 87.11 wind 1.0 270 > th dose independent rect. 6 7
977 87.34 radiation 40.0 90 < th dose dependent rect. 3 18