Os01g0321800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Gas vesicle protein GvpC repeat containing protein.
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Os01g0321800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Gas vesicle protein GvpC repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.39 | 0.317 | 8.16 | 0.276 | 0.141 | -0.671 | -0.314 | 0.247 | -0.0449 | 5.73 | 82.17 | 1286 | -- | -- |
| 45.47 | 0.314 | 8.17 | 0.255 | 0.143 | -0.652 | -0.305 | -- | -0.047 | 5.74 | 82.35 | 1286 | -- | -- |
| 45.4 | 0.314 | 8.16 | 0.287 | 0.165 | -0.718 | -- | 0.391 | -0.0383 | 3.27 | 82.53 | 1189 | -- | -- |
| 45.55 | 0.314 | 8.17 | 0.255 | 0.155 | -0.69 | -- | -- | -0.0465 | 3.69 | 82.57 | 1208 | -- | -- |
| 46.63 | 0.318 | 8.17 | 0.28 | -- | -0.656 | -- | 0.297 | -0.0391 | -- | 81.91 | 1216 | -- | -- |
| 55.34 | 0.349 | 8.16 | 0.158 | 0.106 | -- | -0.382 | -- | -0.0306 | 7.43 | -- | -- | -- | -- |
| 55.74 | 0.35 | 8.16 | 0.149 | 0.105 | -- | -- | -- | -0.0298 | 7.7 | -- | -- | -- | -- |
| 46.69 | 0.318 | 8.17 | 0.255 | -- | -0.629 | -- | -- | -0.0441 | -- | 81.97 | 1304 | -- | -- |
| 47.12 | 0.32 | 8.17 | -- | 0.153 | -0.649 | -- | -- | -0.0614 | 4.19 | 85 | 1240 | -- | -- |
| 56.33 | 0.351 | 8.17 | 0.151 | -- | -- | -- | -- | -0.0283 | -- | -- | -- | -- | -- |
| 56.32 | 0.351 | 8.17 | -- | 0.106 | -- | -- | -- | -0.0464 | 7.6 | -- | -- | -- | -- |
| 48.26 | 0.324 | 8.17 | -- | -- | -0.593 | -- | -- | -0.061 | -- | 84.85 | 1314 | -- | -- |
| 56.93 | 0.352 | 8.17 | -- | -- | -- | -- | -- | -0.045 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.95 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 2 | 43.96 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 3 | 44.69 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 16 |
| 5 | 44.88 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 6 | 44.91 | humidity | 80 | 720 | > th | dose independent | rect. | 8 | 14 |
| 8 | 44.99 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 22 | 45.01 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 24 | 45.11 | humidity | 80 | 720 | < th | dose independent | rect. | 8 | 14 |
| 25 | 45.12 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 40 | 45.14 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 45 | 45.22 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 46 | 45.25 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 11 |
| 50 | 45.33 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 68 | 45.38 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 80 | 45.46 | humidity | 80 | 1440 | < th | dose dependent | sin | 17 | NA |
| 107 | 45.49 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 111 | 45.50 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 115 | 45.52 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 13 |
| 119 | 45.53 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 8 |
| 128 | 45.54 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 17 |
| 131 | 45.55 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 153 | 45.59 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 156 | 45.60 | humidity | 50 | 1440 | > th | dose independent | sin | 12 | NA |
| 163 | 45.60 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 166 | 45.61 | humidity | 80 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 194 | 45.64 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 196 | 45.64 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 21 |
| 247 | 45.73 | humidity | 80 | 720 | > th | dose independent | rect. | 8 | 17 |
| 267 | 45.77 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 268 | 45.77 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 270 | 45.78 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 286 | 45.80 | humidity | 50 | 1440 | < th | dose independent | sin | 12 | NA |
| 325 | 45.84 | humidity | 70 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 373 | 45.86 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 419 | 45.88 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 460 | 45.92 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 471 | 45.93 | humidity | 80 | 720 | > th | dose independent | sin | 21 | NA |
| 488 | 45.94 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 529 | 45.97 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 530 | 45.97 | radiation | 40 | 1440 | > th | dose dependent | sin | 13 | NA |
| 549 | 45.98 | humidity | 80 | 720 | < th | dose independent | sin | 21 | NA |
| 569 | 45.99 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 642 | 46.04 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 655 | 46.06 | radiation | 40 | 1440 | > th | dose independent | sin | 12 | NA |
| 700 | 46.09 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 733 | 46.11 | humidity | 50 | 1440 | > th | dose dependent | sin | 21 | NA |
| 777 | 46.13 | humidity | 60 | 1440 | > th | dose independent | rect. | 17 | 11 |
| 786 | 46.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 791 | 46.14 | humidity | 60 | 1440 | > th | dose independent | rect. | 17 | 6 |
| 793 | 46.14 | humidity | 60 | 1440 | > th | dose independent | rect. | 17 | 15 |
| 819 | 46.16 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 846 | 46.18 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 23 |
| 849 | 46.19 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 943 | 46.25 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 979 | 46.26 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 21 |