BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0321800 Os01g0321800|AK064712
         (210 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62140.1  | chr3:23007277-23008626 FORWARD LENGTH=215          191   2e-49
>AT3G62140.1 | chr3:23007277-23008626 FORWARD LENGTH=215
          Length = 214

 Score =  191 bits (485), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/210 (56%), Positives = 143/210 (68%), Gaps = 23/210 (10%)

Query: 19  IRLVNFISEDQLDEAKRTRGERADDGTAQRDKPLFQILQENKEKKDAEFNERFKHRPPKA 78
           IRL+NF+SE+QLDE+K+ RGER +DGT QRD+ L++IL+ENK+KKDAEFNERFKHRPPKA
Sbjct: 9   IRLLNFVSEEQLDESKKERGERVEDGTFQRDRALYEILKENKDKKDAEFNERFKHRPPKA 68

Query: 79  LDEDEMEFLDKLASSRKEYEQQVANEEAEQLRSFQEAVAARSNIIHE--EA---PTVSRP 133
           LDEDE EFLDKL  S++EYE+Q+ANEE EQLR+FQ AVAARS I+HE  EA   P     
Sbjct: 69  LDEDETEFLDKLEMSKREYERQLANEEDEQLRNFQAAVAARSAILHEPKEAALPPPAPVT 128

Query: 134 EESKPKAKRSQPALLKNVIISVKPQAKKAKLDGEDKPPAKELPSNGHSADH---KPPDAT 190
           +E KP  KR+        II VKPQ KKAK   +++   KE+P NG  A H      D+ 
Sbjct: 129 KEQKPIGKRNPATRPFKAIIKVKPQPKKAKATEKEE---KEIPGNGKPASHIDQASLDSV 185

Query: 191 KG-VLG----------SLVQYDDDESSDGD 209
           KG V G          +LV Y  DES D D
Sbjct: 186 KGNVTGKTTEGLQTGLALVSY-SDESEDDD 214
  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.305    0.125    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,937,211
Number of extensions: 215728
Number of successful extensions: 743
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 743
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 116
Effective length of database: 8,529,465
Effective search space: 989417940
Effective search space used: 989417940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 109 (46.6 bits)