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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0316100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : FAD dependent oxidoreductase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.33 (0.0342) R2 : 0.412
β1 : 0.976 (0.13) R2dD : 0.0848 R2D : -0.0279
β2 : 1.12 (0.0862) R2dC : 0.217 R2C : 0.195
β3 : 1.92 (0.159) R2dE : 0.238 R2E : 0.0864
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.439 (0.0782) R2dN8 : 0.0651 R2N8 : -0.0545
σ : 0.626
deviance : 180.65
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_____
C
peak time of C : 16.6
E
wheather : temperature
threshold : 24.48
memory length : 720
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
179.83 0.63 4.35 0.851 1.12 2.03 -0.165 0.789 0.405 16.6 24.1 717 -- --
180.59 0.626 4.33 0.971 1.12 1.94 -0.196 -- 0.443 16.6 24.44 716 -- --
179.9 0.625 4.35 0.849 1.11 2.03 -- 0.801 0.403 16.6 24.09 718 -- --
180.65 0.626 4.33 0.976 1.12 1.92 -- -- 0.439 16.6 24.48 720 -- --
236.34 0.716 4.32 0.872 -- 2.18 -- 0.877 0.464 -- 25.67 1053 -- --
234.08 0.717 4.41 0.446 1.12 -- -0.2 -- 0.0584 15.7 -- -- -- --
234.2 0.717 4.41 0.443 1.12 -- -- -- 0.0573 15.7 -- -- -- --
236.97 0.717 4.31 1.01 -- 2.07 -- -- 0.487 -- 25.8 1050 -- --
202.56 0.663 4.37 -- 1.12 1.5 -- -- 0.254 16.4 24.34 657 -- --
303.15 0.814 4.41 0.397 -- -- -- -- 0.0275 -- -- -- -- --
239.37 0.724 4.42 -- 1.11 -- -- -- 0.00795 15.7 -- -- -- --
260.37 0.752 4.35 -- -- 1.62 -- -- 0.288 -- 25.7 1022 -- --
307.29 0.818 4.42 -- -- -- -- -- -0.0165 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 173.01 temperature 10 720 > th dose dependent rect. 19 14
3 173.57 temperature 10 720 > th dose dependent rect. 19 16
8 174.26 temperature 15 720 > th dose dependent sin 9 NA
10 174.45 temperature 15 720 > th dose dependent rect. 21 10
12 174.69 temperature 10 720 > th dose dependent rect. 23 8
26 175.41 temperature 30 720 < th dose dependent sin 9 NA
29 175.70 temperature 15 30 > th dose dependent sin 5 NA
33 175.87 temperature 25 720 < th dose dependent rect. 19 17
215 178.75 temperature 15 10 > th dose dependent rect. 23 23
317 179.94 temperature 25 720 < th dose dependent rect. 24 23
335 180.28 temperature 25 720 < th dose dependent no NA NA
344 180.35 temperature 25 720 < th dose dependent rect. 11 23
345 180.37 temperature 30 30 < th dose dependent sin 5 NA
349 180.43 temperature 25 720 < th dose dependent rect. 9 23
437 181.71 temperature 25 720 < th dose dependent rect. 3 23
592 183.66 temperature 10 270 > th dose dependent rect. 2 22
650 184.29 temperature 25 720 < th dose dependent rect. 1 2
653 184.32 temperature 30 30 < th dose dependent rect. 9 23
711 184.95 temperature 30 30 < th dose dependent rect. 7 23
729 185.22 temperature 15 10 > th dose dependent no NA NA
744 185.37 temperature 15 270 > th dose dependent rect. 16 23
781 185.93 temperature 20 30 > th dose dependent rect. 17 23
810 186.22 temperature 25 720 < th dose dependent rect. 3 2
879 186.90 temperature 20 10 > th dose dependent rect. 5 17
897 187.15 temperature 30 10 < th dose dependent rect. 21 23
941 187.56 temperature 20 10 > th dose dependent rect. 4 23
963 187.77 temperature 20 720 > th dose independent rect. 21 17
969 187.84 temperature 10 720 > th dose dependent rect. 12 23
972 187.85 temperature 30 10 < th dose dependent rect. 1 23
975 187.87 temperature 15 270 > th dose dependent rect. 4 18
977 187.88 temperature 20 720 > th dose independent rect. 19 16
983 187.93 temperature 30 10 < th dose dependent no NA NA
988 187.96 temperature 20 720 > th dose independent rect. 21 19