BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0316100 Os01g0316100|Os01g0316100
         (414 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G24580.1  | chr2:10444928-10446178 REVERSE LENGTH=417          337   1e-92

>AT2G24580.1 | chr2:10444928-10446178 REVERSE LENGTH=417
          Length = 416

 Score =  337 bits (863), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 188/401 (46%), Positives = 241/401 (60%), Gaps = 16/401 (3%)

Query: 21  FDVIVVGAGIMGSCXXXXXXXXXXXXXXXXXXXXXXXXGSSHGASRTIRDAYAKAHYPPM 80
           FDVIVVGAG+MGS                         GSSHG SRTIR  Y + +Y  M
Sbjct: 9   FDVIVVGAGVMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYYSM 68

Query: 81  VRLARRLWADAEAESGYRVLTPAPQLTVGPPGDASLLAAVGNS-----GARRVDEDDLAG 135
           V  + RLWA A++E GY+V  P  Q  +GP    SLL+ V          R +D   ++ 
Sbjct: 69  VSESTRLWAAAQSEIGYKVHFPTQQFDMGPADQQSLLSVVATCQKHGLAHRVMDSHAVSE 128

Query: 136 RWGGAFRGVPDGWVAAVSELGGGVLNATKAVAMFQALAVKGGAVVRDNAEVVGVVKKDGE 195
            + G    +P+ W+   +ELGG ++  TKAV+MFQ LA+  GA++RDN +V  + K+DGE
Sbjct: 129 HFSGRI-SIPENWIGVSTELGG-IIKPTKAVSMFQTLAIGHGAILRDNTKVANI-KRDGE 185

Query: 196 AG--VFVRTSGGEEFHGAKCVVTVGAWTSKLVKSVAGVDLPIQPLHALVLYWKVKPGRER 253
           +G  V V T  G++F+G KC+VT GAW SKLVK+VAG+D P++PL   V YW++K G E 
Sbjct: 186 SGEGVIVCTVKGDKFYGKKCIVTAGAWISKLVKTVAGIDFPVEPLETTVCYWRIKEGHEE 245

Query: 254 ELAAEAGFPTFSSHGDPHVYGTPSLELPGLIKINYXXXXXXXXXXXXXXXXXXXXXSRVA 313
           +   +  FPTF+S+G P+VYGTPSLE PGLIK+                         + 
Sbjct: 246 KFTIDGEFPTFASYGAPYVYGTPSLEYPGLIKV--AVHGGYWCDPDKRPWGPGVKLEELK 303

Query: 314 RWIEEFMPDHVEAAGGPVVRQPCMYSMTPDKDFVIDFLGGEFGDDVVVGAGFSGHGFKMG 373
            WI+E     V++  GPV  Q CMYSMTPD+DFVIDFLGGEFG DVVVG GFSGHGFKM 
Sbjct: 304 EWIKERFGGMVDSE-GPVATQLCMYSMTPDEDFVIDFLGGEFGRDVVVGGGFSGHGFKMA 362

Query: 374 PAVGRILAEMAMDGEARTAAEAGVELRHFRISRFEGNAMGN 414
           PAVGRILA+MAM+ E   A   GVE++ F + RFE N  GN
Sbjct: 363 PAVGRILADMAMEVE---AGGGGVEMKQFSLRRFEDNPKGN 400



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,059,244
Number of extensions: 326915
Number of successful extensions: 631
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 313
Effective length of database: 8,337,553
Effective search space: 2609654089
Effective search space used: 2609654089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)