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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0311300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Sorbitol transporter.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.73 (0.0384) R2 : 0.801
β1 : 2.54 (0.147) R2dD : 0.15 R2D : -0.0551
β2 : 2.97 (0.0973) R2dC : 0.404 R2C : 0.289
β3 : -3.02 (0.386) R2dE : 0.0324 R2E : -0.0913
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.34 (0.0825) R2dN8 : 0.475 R2N8 : 0.244
σ : 0.714
deviance : 235.2
__
_____
C
peak time of C : 20
E
wheather : temperature
threshold : 15.6
memory length : 1333
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
232.08 0.716 4.7 0.519 2.97 25.4 -0.0936 58.4 2.36 20 15.09 4889 -- --
254.26 0.748 5.75 2.3 2.95 -2.84 0.131 -- 2.25 19.9 15.2 1521 -- --
232.11 0.71 4.7 0.521 2.97 25.4 -- 58.4 2.36 20 15.09 4888 -- --
235.2 0.714 5.73 2.54 2.97 -3.02 -- -- 2.34 20 15.6 1333 -- --
707.63 1.24 4.69 0.403 -- 25.7 -- 58.9 2.31 -- 15 6756 -- --
269.63 0.77 5.75 2.19 2.97 -- -0.124 -- 2.22 20 -- -- -- --
269.67 0.769 5.75 2.19 2.97 -- -- -- 2.22 20 -- -- -- --
704.81 1.24 5.64 2.65 -- -4.16 -- -- 2.36 -- 15.2 1383 -- --
388.68 0.923 5.8 -- 2.96 -1.22 -- -- 2 20 15.6 1333 -- --
752 1.28 5.68 2.16 -- -- -- -- 2.18 -- -- -- -- --
396 0.931 5.81 -- 2.96 -- -- -- 1.98 20 -- -- -- --
863.02 1.37 5.73 -- -- -2.45 -- -- 1.96 -- 15.2 1383 -- --
874.93 1.38 5.73 -- -- -- -- -- 1.94 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 218.47 temperature 15.0 720 > th dose independent rect. 9 21
2 221.05 humidity 90.0 720 < th dose independent rect. 9 6
3 221.19 temperature 15.0 720 > th dose independent rect. 9 6
6 223.24 temperature 15.0 720 > th dose independent rect. 17 13
7 223.96 temperature 15.0 720 > th dose independent rect. 3 18
8 224.02 temperature 15.0 720 > th dose independent rect. 18 18
12 224.45 temperature 10.0 30 > th dose dependent rect. 3 23
17 225.38 temperature 15.0 720 > th dose dependent rect. 9 6
18 225.59 temperature 15.0 720 > th dose independent rect. 7 23
20 225.65 humidity 80.0 1440 > th dose dependent rect. 9 3
21 225.76 temperature 15.0 720 > th dose independent rect. 1 20
22 225.79 radiation 20.0 4320 < th dose independent rect. 21 9
24 225.93 temperature 15.0 90 > th dose dependent rect. 11 14
26 226.52 temperature 25.0 10 < th dose dependent sin 18 NA
28 226.55 temperature 15.0 270 > th dose dependent rect. 9 14
29 226.85 temperature 10.0 43200 > th dose independent rect. 8 11
38 227.51 temperature 15.0 14400 > th dose independent rect. 7 1
45 227.81 temperature 20.0 270 < th dose dependent rect. 10 12
48 227.97 temperature 15.0 720 > th dose independent rect. 9 14
50 228.01 humidity 80.0 1440 > th dose dependent rect. 10 1
66 228.75 humidity 90.0 1440 < th dose independent rect. 9 2
69 228.76 temperature 20.0 720 < th dose independent rect. 9 8
70 228.79 temperature 15.0 1440 > th dose independent rect. 7 13
71 228.85 radiation 20.0 4320 < th dose independent rect. 5 1
79 229.04 temperature 15.0 720 > th dose independent rect. 19 23
82 229.10 temperature 25.0 10 < th dose dependent rect. 6 21
84 229.13 temperature 25.0 10 < th dose dependent rect. 6 18
86 229.19 humidity 60.0 43200 < th dose independent rect. 5 2
88 229.21 temperature 20.0 270 < th dose dependent rect. 9 14
97 229.42 temperature 20.0 270 < th dose dependent sin 20 NA
104 229.61 temperature 10.0 43200 > th dose independent rect. 9 1
114 229.72 humidity 90.0 1440 > th dose independent rect. 9 2
117 229.75 humidity 50.0 43200 > th dose independent rect. 24 5
119 229.83 humidity 70.0 43200 < th dose dependent rect. 3 4
137 230.16 humidity 80.0 720 < th dose independent rect. 11 1
145 230.34 temperature 20.0 270 < th dose dependent rect. 11 10
149 230.41 humidity 90.0 1440 > th dose independent rect. 9 5
158 230.47 humidity 70.0 1440 > th dose dependent rect. 2 10
159 230.48 temperature 15.0 10 > th dose dependent sin 17 NA
161 230.51 temperature 25.0 10 < th dose dependent rect. 10 14
168 230.62 temperature 15.0 720 > th dose dependent rect. 11 2
180 230.74 humidity 70.0 43200 > th dose independent rect. 3 1
181 230.74 humidity 70.0 14400 < th dose dependent rect. 19 1
196 230.93 humidity 50.0 43200 < th dose dependent rect. 20 11
208 231.07 humidity 60.0 43200 > th dose independent rect. 2 5
213 231.12 temperature 15.0 720 > th dose independent rect. 24 15
224 231.19 temperature 15.0 720 > th dose independent rect. 21 23
227 231.21 temperature 15.0 90 > th dose independent rect. 5 23
228 231.22 temperature 15.0 4320 > th dose independent rect. 9 1
229 231.22 temperature 25.0 10 < th dose dependent rect. 10 17
234 231.28 humidity 50.0 43200 > th dose independent rect. 2 3
248 231.31 temperature 15.0 4320 > th dose independent rect. 3 1
262 231.44 humidity 60.0 43200 < th dose dependent rect. 23 8
288 231.58 atmosphere 1015.0 720 < th dose independent rect. 24 15
296 231.62 temperature 15.0 720 > th dose independent rect. 21 12
313 231.67 temperature 15.0 14400 > th dose independent rect. 16 1
317 231.68 precipitation 0.1 1440 > th dose independent rect. 10 3
323 231.68 precipitation 0.1 1440 > th dose dependent rect. 10 3
336 231.72 radiation 1.0 1440 > th dose independent rect. 10 1
361 231.79 humidity 70.0 43200 < th dose independent rect. 3 1
363 231.81 radiation 1.0 1440 < th dose independent rect. 10 1
373 231.81 radiation 1.0 1440 < th dose dependent rect. 10 1
419 231.91 wind 9.0 14400 > th dose dependent rect. 19 1
436 231.96 temperature 15.0 4320 < th dose dependent rect. 1 1
453 232.01 temperature 15.0 4320 < th dose independent rect. 2 2
468 232.07 humidity 70.0 43200 < th dose dependent rect. 17 16
487 232.12 humidity 80.0 720 < th dose independent rect. 22 16
504 232.18 temperature 15.0 4320 > th dose independent rect. 16 5
508 232.20 temperature 15.0 4320 < th dose independent rect. 22 8
519 232.23 temperature 15.0 4320 < th dose independent rect. 23 1
545 232.28 radiation 10.0 4320 > th dose independent rect. 5 1
573 232.30 radiation 10.0 4320 > th dose dependent rect. 5 1
589 232.32 temperature 15.0 4320 > th dose independent rect. 2 3
590 232.32 temperature 15.0 4320 < th dose independent rect. 1 4
592 232.32 humidity 70.0 43200 < th dose dependent rect. 18 14
617 232.35 temperature 15.0 10 > th dose dependent rect. 9 23
618 232.36 temperature 15.0 4320 < th dose independent sin 8 NA
625 232.37 temperature 15.0 4320 > th dose independent rect. 24 12
698 232.54 temperature 15.0 4320 > th dose independent rect. 24 15
704 232.55 temperature 15.0 4320 > th dose independent rect. 7 5
714 232.57 temperature 15.0 4320 > th dose independent rect. 24 8
729 232.60 temperature 15.0 4320 < th dose dependent rect. 21 15
740 232.63 temperature 15.0 4320 > th dose independent rect. 24 5
778 232.69 temperature 15.0 720 > th dose independent rect. 19 15
786 232.70 temperature 15.0 90 > th dose independent rect. 21 23
791 232.71 temperature 15.0 4320 < th dose dependent rect. 22 6
813 232.74 temperature 20.0 1440 < th dose dependent rect. 10 1
844 232.79 temperature 15.0 4320 > th dose independent sin 7 NA
847 232.79 temperature 10.0 43200 < th dose independent rect. 8 14
862 232.81 temperature 15.0 4320 < th dose dependent rect. 21 8
865 232.82 temperature 10.0 43200 < th dose independent rect. 20 2
884 232.83 temperature 20.0 1440 < th dose independent rect. 9 3
891 232.83 humidity 90.0 1440 > th dose dependent rect. 7 10
897 232.84 wind 9.0 14400 > th dose independent rect. 24 1
898 232.84 temperature 15.0 14400 < th dose independent rect. 7 1
940 232.84 wind 9.0 14400 > th dose dependent rect. 24 1
941 232.84 temperature 15.0 14400 < th dose dependent rect. 7 1
946 232.84 temperature 10.0 43200 < th dose dependent rect. 20 1