BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0311300 Os01g0311300|AK062341
(127 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G36670.1 | chr4:17287680-17289483 REVERSE LENGTH=494 84 2e-17
AT2G18480.1 | chr2:8009582-8011243 REVERSE LENGTH=509 80 3e-16
AT3G18830.1 | chr3:6489000-6491209 REVERSE LENGTH=540 74 2e-14
AT2G16120.1 | chr2:6996727-6998441 REVERSE LENGTH=512 72 6e-14
AT2G16130.1 | chr2:7002322-7004043 FORWARD LENGTH=512 72 9e-14
AT2G20780.1 | chr2:8947496-8949170 REVERSE LENGTH=527 68 1e-12
>AT4G36670.1 | chr4:17287680-17289483 REVERSE LENGTH=494
Length = 493
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 49/66 (74%)
Query: 38 LHPTPPVRRIVIAALGIYFFQHLTGIEVVVLYGPSIFKAASIASRNSVLAATIGVGVTKT 97
L PTP VRR+++ ALGI+FFQH +GIE V+LYGP IFK A I +++ + TIGVG+ KT
Sbjct: 266 LRPTPAVRRVLLTALGIHFFQHASGIEAVLLYGPRIFKKAGITTKDKLFLVTIGVGIMKT 325
Query: 98 AFIIAS 103
FI +
Sbjct: 326 TFIFTA 331
>AT2G18480.1 | chr2:8009582-8011243 REVERSE LENGTH=509
Length = 508
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 49/64 (76%)
Query: 38 LHPTPPVRRIVIAALGIYFFQHLTGIEVVVLYGPSIFKAASIASRNSVLAATIGVGVTKT 97
+ P P VR I+IAA+GI+FF+H TGIE VVLY P IFK A + S++ +L AT+GVG+TK
Sbjct: 271 IKPRPAVRLILIAAVGIHFFEHATGIEAVVLYSPRIFKKAGVVSKDKLLLATVGVGLTKA 330
Query: 98 AFII 101
FII
Sbjct: 331 FFII 334
>AT3G18830.1 | chr3:6489000-6491209 REVERSE LENGTH=540
Length = 539
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 48/65 (73%)
Query: 37 FLHPTPPVRRIVIAALGIYFFQHLTGIEVVVLYGPSIFKAASIASRNSVLAATIGVGVTK 96
+ PTP VRR++IAA+GI+FFQ +GI+ VVL+ P IFK A + + + L AT+ VGV K
Sbjct: 284 LIRPTPAVRRVMIAAIGIHFFQQASGIDAVVLFSPRIFKTAGLKTDHQQLLATVAVGVVK 343
Query: 97 TAFII 101
T+FI+
Sbjct: 344 TSFIL 348
>AT2G16120.1 | chr2:6996727-6998441 REVERSE LENGTH=512
Length = 511
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 38 LHPTPPVRRIVIAALGIYFFQHLTGIEVVVLYGPSIFKAASIASRNSVLAATIGVGVTKT 97
+ PTP VR I+IA LGI+F Q +GI+ VVLY P+IF A + S+N L AT+ VGV KT
Sbjct: 275 VRPTPSVRHILIACLGIHFAQQASGIDAVVLYSPTIFSKAGLKSKNDQLLATVAVGVVKT 334
Query: 98 AFII 101
FI+
Sbjct: 335 LFIV 338
>AT2G16130.1 | chr2:7002322-7004043 FORWARD LENGTH=512
Length = 511
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 38 LHPTPPVRRIVIAALGIYFFQHLTGIEVVVLYGPSIFKAASIASRNSVLAATIGVGVTKT 97
+ PTP VR I+IA LGI+F Q +GI+ VVLY P+IF A + S+N L AT+ VGV KT
Sbjct: 275 VRPTPSVRHILIACLGIHFSQQASGIDAVVLYSPTIFSRAGLKSKNDQLLATVAVGVVKT 334
Query: 98 AFII 101
FI+
Sbjct: 335 LFIV 338
>AT2G20780.1 | chr2:8947496-8949170 REVERSE LENGTH=527
Length = 526
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%)
Query: 38 LHPTPPVRRIVIAALGIYFFQHLTGIEVVVLYGPSIFKAASIASRNSVLAATIGVGVTKT 97
L P+P VR+++I GI FQ +TGI+ V Y P I K A I +LAAT+ VGVTKT
Sbjct: 291 LSPSPVVRKMLIVGFGIQCFQQITGIDATVYYSPEILKEAGIQDETKLLAATVAVGVTKT 350
Query: 98 AFII 101
FI+
Sbjct: 351 VFIL 354
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.141 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,812,956
Number of extensions: 49295
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 6
Length of query: 127
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 40
Effective length of database: 8,721,377
Effective search space: 348855080
Effective search space used: 348855080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 105 (45.1 bits)