Os01g0310100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phospholipase D p1 (EC 3.1.4.4) (AtPLDp1) (Phospholipase D1 PHOX and PX containing domain) (Phospholipase D zeta 1) (PLDzeta1).
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Os01g0310100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phospholipase D p1 (EC 3.1.4.4) (AtPLDp1) (Phospholipase D1 PHOX and PX containing domain) (Phospholipase D zeta 1) (PLDzeta1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.56 | 0.592 | 9.06 | -1.1 | 2.11 | -1.81 | 0.412 | 0.0696 | -0.211 | 5.92 | 20.02 | 3681 | -- | -- |
| 158.57 | 0.586 | 9.07 | -1.11 | 2.11 | -1.81 | 0.421 | -- | -0.211 | 5.92 | 20 | 3680 | -- | -- |
| 156.14 | 0.582 | 9.03 | -0.953 | 2.1 | -1.55 | -- | 0.939 | -0.126 | 5.96 | 21.12 | 3760 | -- | -- |
| 157.44 | 0.584 | 9.06 | -1.17 | 2.11 | -1.65 | -- | -- | -0.176 | 5.92 | 21 | 3828 | -- | -- |
| 370.18 | 0.896 | 9.07 | -1.16 | -- | -1.25 | -- | 1.55 | -0.127 | -- | 22.39 | 540 | -- | -- |
| 217.72 | 0.692 | 9.17 | -2.18 | 2.11 | -- | 0.465 | -- | -0.694 | 6.06 | -- | -- | -- | -- |
| 218.23 | 0.692 | 9.17 | -2.17 | 2.11 | -- | -- | -- | -0.695 | 6.1 | -- | -- | -- | -- |
| 260.64 | 0.752 | 9.11 | -1.63 | -- | -1.68 | -- | -- | -0.0191 | -- | 25.79 | 347 | -- | -- |
| 182.97 | 0.63 | 9.02 | -- | 2.23 | -1.89 | -- | -- | 0.0627 | 6.16 | 20.9 | 24171 | -- | -- |
| 449.76 | 0.991 | 9.21 | -2.11 | -- | -- | -- | -- | -0.648 | -- | -- | -- | -- | -- |
| 342.49 | 0.866 | 9.12 | -- | 2.08 | -- | -- | -- | -0.453 | 6.15 | -- | -- | -- | -- |
| 331.55 | 0.848 | 9.04 | -- | -- | -1.86 | -- | -- | 0.114 | -- | 25.83 | 365 | -- | -- |
| 567.33 | 1.11 | 9.16 | -- | -- | -- | -- | -- | -0.414 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 145.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 3 | 146.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 8 | 146.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 10 | 146.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 14 | 147.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 19 | 147.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 20 | 147.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 81 | 149.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 105 | 150.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 107 | 150.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 134 | 151.93 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 17 |
| 142 | 152.31 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 145 | 152.40 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 154 | 152.73 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 157 | 152.78 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 162 | 152.87 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 165 | 152.92 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 171 | 152.96 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 176 | 153.01 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 177 | 153.03 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 182 | 153.10 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 190 | 153.27 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 193 | 153.30 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 204 | 153.53 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 207 | 153.57 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 4 |
| 375 | 155.64 | radiation | 10 | 720 | < th | dose independent | rect. | 11 | 20 |
| 450 | 156.49 | radiation | 10 | 1440 | < th | dose independent | sin | 15 | NA |
| 718 | 159.39 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 939 | 161.35 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 948 | 161.44 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 981 | 161.66 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 983 | 161.70 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 1 |