BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0310100 Os01g0310100|AK120868
         (458 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16785.1  | chr3:5711329-5718696 FORWARD LENGTH=1097           460   e-130
AT3G05630.1  | chr3:1635321-1640105 FORWARD LENGTH=1047           413   e-115

>AT3G16785.1 | chr3:5711329-5718696 FORWARD LENGTH=1097
          Length = 1096

 Score =  460 bits (1183), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/356 (67%), Positives = 280/356 (78%), Gaps = 8/356 (2%)

Query: 63  WLLYKKASQVLYLHFALKRRAFLEEFHEKQEQVKEWLQNLGIGEHIPXXXXXXXXXXXXX 122
           W L KKASQV YLHFALK+RAF+EE HEKQEQVKEWLQNLGIG+H P             
Sbjct: 83  WQLVKKASQVFYLHFALKKRAFIEEIHEKQEQVKEWLQNLGIGDHPPVVQDEDADEVPL- 141

Query: 123 PSQHDEHSVKNRNVPSSAVLPVIRPALGRQQSVSDRAKVAMQEYLNHFLGNMEIVNSREV 182
              H + S KNR+VPSSA LPVIRP LGRQQS+S R K AMQEYLNHFLGN++IVNSREV
Sbjct: 142 ---HQDESAKNRDVPSSAALPVIRP-LGRQQSISVRGKHAMQEYLNHFLGNLDIVNSREV 197

Query: 183 CKFLEVSLLSFLPEYGPKLKEDYVTVGHLPKID--EGSSNICCLCGCFSFCNSSWQKVWA 240
           C+FLEVS+LSF PEYGPKLKEDY+ V HLPK    +  SN CC C  F  CN +WQKVW 
Sbjct: 198 CRFLEVSMLSFSPEYGPKLKEDYIMVKHLPKFSKSDDDSNRCCGCCWFCCCNDNWQKVWG 257

Query: 241 VLKPGFLALLQDPFDPKLLDIVIFDVSPHMDRNGEGQSTLAREIKEHNPLHFAFEVSSGG 300
           VLKPGFLALL+DPFD KLLDI++FDV P  + N     +LA E+K+HNPL  AF+V+SG 
Sbjct: 258 VLKPGFLALLEDPFDAKLLDIIVFDVLPVSNGNDGVDISLAVELKDHNPLRHAFKVTSGN 317

Query: 301 RTIKLRTRSSAKVKDWVSAINTAR-RPPEGWSHPHRFGSFAPPRGLTEDGSVVQWFLDGQ 359
           R+I++R ++SAKVKDWV++IN A  RPPEGW HPHRFGS+APPRGLT+DGS  QWF+DG 
Sbjct: 318 RSIRIRAKNSAKVKDWVASINDAALRPPEGWCHPHRFGSYAPPRGLTDDGSQAQWFVDGG 377

Query: 360 AAFNAIASSIEEAKSEIFITDWWLCPELYLRRPFHHHESSRLDILLESRAKQGVQV 415
           AAF AIA++IE AKSEIFI  WW+CPELYLRRPF  H SSRLD LLE++AKQGVQ+
Sbjct: 378 AAFAAIAAAIENAKSEIFICGWWVCPELYLRRPFDPHTSSRLDNLLENKAKQGVQI 433



>AT3G05630.1 | chr3:1635321-1640105 FORWARD LENGTH=1047
          Length = 1046

 Score =  413 bits (1061), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/356 (58%), Positives = 251/356 (70%), Gaps = 8/356 (2%)

Query: 63  WLLYKKASQVLYLHFALKRRAFLEEFHEKQEQVKEWLQNLGIGE-HIPXXXXXXXXXXXX 121
           W L KKASQVLYLHFALK+R  +EE H+KQEQV+EWL +LGI +                
Sbjct: 78  WTLQKKASQVLYLHFALKKRLIIEELHDKQEQVREWLHSLGIFDMQGSVVQDDEEPDDGA 137

Query: 122 XPSQHDEHSVKNRNVPSSAVLPVIRPALGRQQSVSDRAKVAMQEYLNHFLGNMEIVNSRE 181
            P  + E S+KNRNVPS A LP+IRP +GR ++V DR + AMQ YL+ FLGN++IVNS+E
Sbjct: 138 LPLHYTEDSIKNRNVPSRAALPIIRPTIGRSETVVDRGRTAMQGYLSLFLGNLDIVNSKE 197

Query: 182 VCKFLEVSLLSFLPEYGPKLKEDYVTVGHLPKIDEGSSNICCL-CGCFSFCNSSWQKVWA 240
           VCKFLEVS LSF  EYG K+KE YVTV HL  +       CCL   C  F  +SW KVWA
Sbjct: 198 VCKFLEVSRLSFAREYGSKMKEGYVTVKHLRDVPGSDGVRCCLPTHCLGFFGTSWTKVWA 257

Query: 241 VLKPGFLALLQDPFDPKLLDIVIFD-VSPHMDRNGEGQSTLAREIKEHNPLHFAFEVSSG 299
           VLKPGFLALL+DPF  KLLDI++FD +     +    Q  LA ++KEHNPL F F+V+SG
Sbjct: 258 VLKPGFLALLEDPFSGKLLDIMVFDTLGLQGTKESSEQPRLAEQVKEHNPLRFGFKVTSG 317

Query: 300 GRTIKLRTRSSAKVKDWVSAINTARRPPEGWSHPHRFGSFAPPRGLTEDGSVVQWFLDGQ 359
            RT++LRT SS KVK+WV A++ A     G   PHRFGSFAPPRGLT DGS  QWF+DG 
Sbjct: 318 DRTVRLRTTSSRKVKEWVKAVDEA-----GCYSPHRFGSFAPPRGLTSDGSQAQWFVDGH 372

Query: 360 AAFNAIASSIEEAKSEIFITDWWLCPELYLRRPFHHHESSRLDILLESRAKQGVQV 415
            AF AIA +I+ A SEIF+T WWLCPELYL+RPF  H S RLD LLE++AKQGV++
Sbjct: 373 TAFEAIAFAIQNATSEIFMTGWWLCPELYLKRPFEDHPSLRLDALLETKAKQGVKI 428



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,630,259
Number of extensions: 353601
Number of successful extensions: 793
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 785
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 356
Effective length of database: 8,310,137
Effective search space: 2958408772
Effective search space used: 2958408772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)