Os01g0309800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hydrogenase expression/formation protein hypB.
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Os01g0309800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hydrogenase expression/formation protein hypB.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.53 | 0.507 | 13.4 | 1.06 | 1.43 | -1.33 | 0.34 | -1.97 | 0.229 | 22 | 76 | 1202 | -- | -- |
| 121 | 0.512 | 13.4 | 1.18 | 1.41 | -1.4 | 0.0323 | -- | 0.24 | 22 | 75.34 | 1190 | -- | -- |
| 116.96 | 0.504 | 13.4 | 1.06 | 1.43 | -1.34 | -- | -1.83 | 0.227 | 22 | 75.87 | 1200 | -- | -- |
| 120.67 | 0.512 | 13.4 | 1.19 | 1.43 | -1.51 | -- | -- | 0.232 | 22 | 74.78 | 1196 | -- | -- |
| 217.82 | 0.687 | 13.3 | 1.01 | -- | -1.12 | -- | -1.53 | 0.265 | -- | 81.06 | 1479 | -- | -- |
| 171.42 | 0.614 | 13.3 | 0.925 | 1.24 | -- | -0.097 | -- | 0.34 | 21.5 | -- | -- | -- | -- |
| 171.45 | 0.613 | 13.3 | 0.929 | 1.24 | -- | -- | -- | 0.34 | 21.5 | -- | -- | -- | -- |
| 221.36 | 0.693 | 13.3 | 1.14 | -- | -1.24 | -- | -- | 0.283 | -- | 80.99 | 1479 | -- | -- |
| 158.15 | 0.586 | 13.4 | -- | 1.46 | -1.37 | -- | -- | 0.13 | 21.8 | 75.66 | 1186 | -- | -- |
| 261.36 | 0.755 | 13.3 | 0.937 | -- | -- | -- | -- | 0.336 | -- | -- | -- | -- | -- |
| 194.19 | 0.652 | 13.4 | -- | 1.24 | -- | -- | -- | 0.237 | 21.5 | -- | -- | -- | -- |
| 255.16 | 0.744 | 13.3 | -- | -- | -1.06 | -- | -- | 0.27 | -- | 230.4 | 1489 | -- | -- |
| 284.5 | 0.787 | 13.3 | -- | -- | -- | -- | -- | 0.232 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.22 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 7 | 122.38 | humidity | 70 | 1440 | < th | dose dependent | sin | 11 | NA |
| 13 | 122.70 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 14 | 122.71 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 16 | 122.98 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 18 | 123.11 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 19 |
| 19 | 123.14 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 14 |
| 21 | 123.17 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 12 |
| 25 | 123.21 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 5 |
| 26 | 123.21 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 9 |
| 31 | 123.28 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 16 |
| 48 | 123.87 | humidity | 70 | 1440 | < th | dose independent | sin | 11 | NA |
| 50 | 123.98 | humidity | 50 | 4320 | > th | dose independent | sin | 12 | NA |
| 69 | 124.72 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 15 |
| 71 | 124.73 | humidity | 50 | 4320 | < th | dose independent | rect. | 15 | 20 |
| 73 | 124.74 | humidity | 70 | 1440 | > th | dose independent | sin | 10 | NA |
| 172 | 125.27 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 173 | 125.28 | humidity | 50 | 4320 | < th | dose independent | sin | 11 | NA |
| 185 | 125.41 | humidity | 50 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 222 | 125.61 | humidity | 60 | 1440 | < th | dose independent | sin | 16 | NA |
| 231 | 125.67 | humidity | 60 | 1440 | > th | dose independent | sin | 16 | NA |
| 273 | 126.07 | humidity | 60 | 1440 | < th | dose independent | rect. | 12 | 22 |
| 293 | 126.27 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 299 | 126.31 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 310 | 126.32 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 335 | 126.37 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 343 | 126.43 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 358 | 126.46 | humidity | 60 | 1440 | > th | dose independent | rect. | 10 | 17 |
| 362 | 126.47 | humidity | 60 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 363 | 126.47 | humidity | 60 | 1440 | > th | dose independent | rect. | 10 | 15 |
| 554 | 126.76 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 558 | 126.76 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 561 | 126.77 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 564 | 126.77 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 19 |
| 569 | 126.77 | humidity | 60 | 1440 | > th | dose independent | rect. | 22 | 21 |
| 627 | 126.80 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 630 | 126.81 | humidity | 60 | 1440 | > th | dose independent | no | NA | NA |
| 650 | 126.81 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 21 |
| 656 | 126.81 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 660 | 126.81 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 683 | 126.84 | humidity | 60 | 1440 | < th | dose independent | no | NA | NA |
| 790 | 126.91 | wind | 3 | 14400 | < th | dose independent | rect. | 3 | 1 |