BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0309800 Os01g0309800|AK110758
(248 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G56891.1 | chr3:21064199-21064922 REVERSE LENGTH=167 67 1e-11
AT1G06330.1 | chr1:1931671-1932266 REVERSE LENGTH=160 63 1e-10
AT1G29100.1 | chr1:10169084-10169619 FORWARD LENGTH=142 59 2e-09
AT5G27690.1 | chr5:9803796-9805036 FORWARD LENGTH=353 59 3e-09
AT4G08570.1 | chr4:5455123-5455975 REVERSE LENGTH=151 57 6e-09
AT4G38580.1 | chr4:18034596-18035693 FORWARD LENGTH=154 57 9e-09
AT5G66110.1 | chr5:26430245-26430778 FORWARD LENGTH=148 56 2e-08
AT5G37860.1 | chr5:15069578-15070555 REVERSE LENGTH=263 56 2e-08
AT4G39700.1 | chr4:18424265-18424906 FORWARD LENGTH=159 55 4e-08
AT1G56210.1 | chr1:21035715-21037019 FORWARD LENGTH=365 54 7e-08
AT4G35060.1 | chr4:16685874-16686419 REVERSE LENGTH=154 53 1e-07
AT3G05220.1 | chr3:1488808-1491171 FORWARD LENGTH=578 53 1e-07
AT5G19090.1 | chr5:6387910-6389855 FORWARD LENGTH=588 53 2e-07
AT1G22990.1 | chr1:8139221-8140045 FORWARD LENGTH=153 53 2e-07
AT3G06130.1 | chr3:1853048-1854673 REVERSE LENGTH=474 52 3e-07
AT1G71050.1 | chr1:26803322-26803946 REVERSE LENGTH=153 52 3e-07
AT2G28660.1 | chr2:12295419-12296944 FORWARD LENGTH=266 51 5e-07
AT5G24580.1 | chr5:8410394-8412087 REVERSE LENGTH=320 51 5e-07
AT2G18196.1 | chr2:7920793-7922268 REVERSE LENGTH=179 49 2e-06
AT1G23000.1 | chr1:8143614-8144865 FORWARD LENGTH=359 49 3e-06
AT2G37390.1 | chr2:15694300-15695461 FORWARD LENGTH=260 48 4e-06
>AT3G56891.1 | chr3:21064199-21064922 REVERSE LENGTH=167
Length = 166
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 10 ITELHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKAIRKTKR 68
I EL V MDC GCE K+R+ + +DGV V +D QKVTV G D E ++K +++T R
Sbjct: 17 IVELLVDMDCKGCEKKVRRAISKLDGVDTVEIDVDRQKVTVTGYVDREEVLKMVKRTGR 75
>AT1G06330.1 | chr1:1931671-1932266 REVERSE LENGTH=160
Length = 159
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 9 RITELHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKAIRKTKR 68
+ E+ V MDC GCE +++ L+ + GV V +D QKVTV G AD ++++K +RKT R
Sbjct: 11 QTIEMRVHMDCVGCESRVKNALQKMRGVDAVEIDMVQQKVTVTGYADQKKVLKKVRKTGR 70
Query: 69 VPTIFS 74
++
Sbjct: 71 RAELWQ 76
>AT1G29100.1 | chr1:10169084-10169619 FORWARD LENGTH=142
Length = 141
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 13 LHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKAIRK-TKRVPT 71
+ V MDC GCE+K+RK L ++GV +V +D Q+VTV G A+ ++++K R TKR
Sbjct: 1 MEVPMDCPGCENKVRKALEKMNGVHDVQIDIKQQRVTVTGSAEQKKVLKVARNVTKRDIC 60
Query: 72 IFSH 75
++S+
Sbjct: 61 LWSY 64
>AT5G27690.1 | chr5:9803796-9805036 FORWARD LENGTH=353
Length = 352
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 13 LHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKAIRKTKR 68
L V + C GC+ KI+K L IDGV +D QKVTV+G +PE ++K I K R
Sbjct: 34 LRVSIHCEGCKRKIKKILSKIDGVYTTNIDVKQQKVTVIGNVEPEILIKKIMKAGR 89
>AT4G08570.1 | chr4:5455123-5455975 REVERSE LENGTH=151
Length = 150
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 16 RMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKAIRKTKR 68
R+DC GCE KI+ L + GV V VD QKVTV G DP+++++A + TK+
Sbjct: 34 RIDCEGCERKIKHVLSGVKGVKSVDVDVKLQKVTVTGYIDPKKVLEAAKSTKK 86
>AT4G38580.1 | chr4:18034596-18035693 FORWARD LENGTH=154
Length = 153
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 9 RITELHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIV 60
+ E+ V+MDC GCE K+R+++ + GVS V ++ + KVTVVG DP ++V
Sbjct: 26 QTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVV 77
>AT5G66110.1 | chr5:26430245-26430778 FORWARD LENGTH=148
Length = 147
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 11 TELHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIV 60
E+ V+MDC GCE ++RK++ + GVS+V VD K+TV G P ++V
Sbjct: 21 VEIKVKMDCEGCERRVRKSVEGMKGVSKVTVDPKQSKLTVEGFVQPSKVV 70
>AT5G37860.1 | chr5:15069578-15070555 REVERSE LENGTH=263
Length = 262
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 13 LHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKAIRK 65
L V ++C GC+ K++KTLR I+GV V +D + V V G DPE +VK + K
Sbjct: 14 LKVNINCQGCKMKVKKTLRKIEGVYSVDIDTDQEAVIVRGNLDPEILVKKLNK 66
>AT4G39700.1 | chr4:18424265-18424906 FORWARD LENGTH=159
Length = 158
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 9 RITELHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIV 60
+ EL VRMDC+GC KI+ +L ++ GV V ++ QKVTV G AD +++
Sbjct: 32 QTVELKVRMDCDGCVLKIKNSLSSLKGVKTVEINKKQQKVTVSGYADASKVL 83
>AT1G56210.1 | chr1:21035715-21037019 FORWARD LENGTH=365
Length = 364
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 13 LHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKAIRK 65
L V + C GC+ K++K L +I+GV +V +D KVTV+GI PE ++K + K
Sbjct: 44 LKVSIHCEGCKRKVKKILTSIEGVFKVDIDVKQHKVTVIGIISPEILLKKLNK 96
>AT4G35060.1 | chr4:16685874-16686419 REVERSE LENGTH=154
Length = 153
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 11 TELHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKAI 63
++ V +DC GCE K+R+ L + G+ +V ++ +QKVTVVG +P ++V I
Sbjct: 27 VDVRVLIDCEGCERKVRRALEGMRGIRDVTIEPNAQKVTVVGYVEPNKVVARI 79
>AT3G05220.1 | chr3:1488808-1491171 FORWARD LENGTH=578
Length = 577
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 13 LHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKAIRKTKRVPTI 72
L V + C GC+HK++K L+ I+GV V D +VTV G DP +VK + K+ + I
Sbjct: 14 LKVNVHCEGCKHKVKKQLQKIEGVYSVKADVEQGRVTVTGNIDPALLVKKLSKSGKHAEI 73
Query: 73 F 73
Sbjct: 74 L 74
>AT5G19090.1 | chr5:6387910-6389855 FORWARD LENGTH=588
Length = 587
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 13 LHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKAIRKTKR 68
L V + C+GC+ K++K L+ I+GV +DA KVTV G DP ++K + K+ +
Sbjct: 14 LKVNIHCDGCKQKVKKILQKIEGVFTTKIDAELGKVTVSGNVDPSVLIKKLLKSGK 69
>AT1G22990.1 | chr1:8139221-8140045 FORWARD LENGTH=153
Length = 152
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 9 RITELHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKAIRKT 66
+ + V++DC+GCE KI+ + +I G V V+ KVTV G DP++++K ++ T
Sbjct: 29 QTVNIKVKIDCDGCERKIKNAVSSIKGAKSVEVNRKMHKVTVSGYVDPKKVLKTVQST 86
>AT3G06130.1 | chr3:1853048-1854673 REVERSE LENGTH=474
Length = 473
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 13 LHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKAIRKTKR 68
L V + C+GC+ K++K L+ I+GV +D+ KVTV G DP ++K + K+ +
Sbjct: 14 LKVNIHCDGCKQKVKKILQKIEGVFTTKIDSEQGKVTVSGSVDPSVLIKKLAKSGK 69
>AT1G71050.1 | chr1:26803322-26803946 REVERSE LENGTH=153
Length = 152
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 41/68 (60%)
Query: 9 RITELHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKAIRKTKR 68
+ + V+MDC+GCE +++ + ++ GV V V+ KVTV G +P++++K I +T +
Sbjct: 28 QTVNIKVKMDCDGCERRVKNAVSSMKGVKSVEVNRKIHKVTVSGYVEPKKVLKRIERTGK 87
Query: 69 VPTIFSHT 76
I+ +
Sbjct: 88 KAEIWPYV 95
>AT2G28660.1 | chr2:12295419-12296944 FORWARD LENGTH=266
Length = 265
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 3 AESETPRITELHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKA 62
A S ++ L V + C GCE K+RK + ++GV+ +D A++KVTVVG P +V++
Sbjct: 177 APSTDDQVVVLRVSIHCKGCEGKVRKHISKMEGVTSYTIDLATKKVTVVGKITPVGLVES 236
Query: 63 IRKTK 67
I K K
Sbjct: 237 ISKVK 241
>AT5G24580.1 | chr5:8410394-8412087 REVERSE LENGTH=320
Length = 319
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 13 LHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKAI-RKTKRVPT 71
L+V + C GC KI +++ I GV EV +D +VT+ G+ DP+ + I +KTKR+
Sbjct: 60 LYVDLHCVGCAKKIERSILKIRGVEEVVMDMNENQVTIKGVLDPQAVCNKIKKKTKRMAK 119
Query: 72 IFS 74
+ S
Sbjct: 120 VLS 122
>AT2G18196.1 | chr2:7920793-7922268 REVERSE LENGTH=179
Length = 178
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 36/54 (66%)
Query: 12 ELHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKAIRK 65
+L VRM C+GCE ++ + + GV V V+ ++VTVVG + ++++KA+R+
Sbjct: 49 DLKVRMCCSGCERVVKHAIYKLRGVDSVEVNLEMERVTVVGYVERKKVLKAVRR 102
>AT1G23000.1 | chr1:8143614-8144865 FORWARD LENGTH=359
Length = 358
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 13 LHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKAIRKTKRVPTI 72
L V + C GC K++K L+ I+GV V ++A QKVTV G D ++ + K + +
Sbjct: 17 LRVNIHCEGCNKKVKKLLQRIEGVCHVKIEAEHQKVTVSGSVDSATLINKLVKAGKHAEL 76
Query: 73 FS 74
+S
Sbjct: 77 WS 78
>AT2G37390.1 | chr2:15694300-15695461 FORWARD LENGTH=260
Length = 259
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 9 RITELHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIVKAIRKTK 67
++ L V + C GCE K+RK L + GV+ +D A++KVTV G P I+ +I K K
Sbjct: 181 QVVVLKVSLHCRGCEGKVRKHLARMQGVTSFNIDFAAKKVTVTGDITPLEILDSISKVK 239
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,107,878
Number of extensions: 156761
Number of successful extensions: 469
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 470
Number of HSP's successfully gapped: 27
Length of query: 248
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 152
Effective length of database: 8,474,633
Effective search space: 1288144216
Effective search space used: 1288144216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)