Os01g0304400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0304400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 359.69 | 0.891 | 7.15 | 5.11 | 0.375 | 2.15 | 2.55 | 1.49 | -1.48 | 5.41 | 10.66 | 24532 | 7.06 | 4.09 |
| 359.1 | 0.883 | 7.16 | 5.09 | 0.391 | 2.2 | 2.55 | -- | -1.45 | 5.37 | 10.91 | 28818 | 7.15 | 4.13 |
| 375.11 | 0.902 | 7.16 | 5.11 | 0.393 | 2.15 | -- | 1.5 | -1.49 | 5.23 | 10.81 | 24525 | 7.1 | 4.13 |
| 374.26 | 0.901 | 7.18 | 4.92 | 0.374 | 2.33 | -- | -- | -1.49 | 5.28 | 10.99 | 28813 | 7.58 | 4.05 |
| 383.11 | 0.912 | 7.16 | 5.15 | -- | 2.17 | -- | 1.72 | -1.47 | -- | 10.82 | 24525 | 7.1 | 4.14 |
| 469.28 | 1.02 | 7 | 5.86 | 0.405 | -- | 2.66 | -- | -0.692 | 5.23 | -- | -- | -- | -- |
| 486.78 | 1.03 | 7.01 | 5.86 | 0.423 | -- | -- | -- | -0.705 | 4.75 | -- | -- | -- | -- |
| 382.43 | 0.911 | 7.18 | 4.89 | -- | 2.38 | -- | -- | -1.5 | -- | 10.95 | 28817 | 7.72 | 3.98 |
| 544.53 | 1.09 | 6.92 | -- | 0.269 | 3.43 | -- | -- | -1.58 | 7.78 | 3.074 | 38820 | 8.4 | 4.29 |
| 496.25 | 1.04 | 7.01 | 5.88 | -- | -- | -- | -- | -0.694 | -- | -- | -- | -- | -- |
| 1392.75 | 1.75 | 7.15 | -- | 0.532 | -- | -- | -- | -1.36 | 4.43 | -- | -- | -- | -- |
| 413.94 | 0.948 | 7.44 | -- | -- | 4.33 | -- | -- | -2.59 | -- | 3.198 | 47520 | 7.82 | 4.63 |
| 1407.91 | 1.75 | 7.16 | -- | -- | -- | -- | -- | -1.35 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 334.85 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 2 | 339.03 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 4 | 349.19 | wind | 1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 5 | 349.82 | wind | 1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 7 | 351.27 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 8 | 353.25 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 9 | 356.68 | wind | 1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 11 | 358.37 | temperature | 25 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 12 | 358.65 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 4 |
| 13 | 359.03 | temperature | 20 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 32 | 359.87 | temperature | 25 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 33 | 359.90 | temperature | 30 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 35 | 359.93 | temperature | 25 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 55 | 360.48 | temperature | 25 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 125 | 362.02 | radiation | 10 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 198 | 362.88 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 8 |
| 219 | 363.07 | temperature | 25 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 238 | 363.19 | temperature | 20 | 43200 | > th | dose dependent | sin | 3 | NA |
| 278 | 363.43 | temperature | 25 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 370 | 363.98 | temperature | 25 | 43200 | > th | dose independent | sin | 3 | NA |
| 418 | 364.32 | temperature | 25 | 43200 | < th | dose independent | sin | 3 | NA |
| 448 | 364.51 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 684 | 365.53 | temperature | 20 | 43200 | > th | dose dependent | rect. | 7 | 22 |
| 690 | 365.55 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 730 | 365.63 | radiation | 10 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 746 | 365.68 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 779 | 365.78 | temperature | 20 | 43200 | > th | dose dependent | no | NA | NA |
| 869 | 366.04 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 980 | 366.38 | temperature | 20 | 43200 | > th | dose dependent | rect. | 4 | 1 |