BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0304400 Os01g0304400|Os01g0304400
         (164 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02090.1  | chr4:923122-923730 FORWARD LENGTH=203               49   1e-06

>AT4G02090.1 | chr4:923122-923730 FORWARD LENGTH=203
          Length = 202

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 11/97 (11%)

Query: 1  MGNSLALRCVCGGGAARRPLVIGPDGRPVCVEEAATGAAELMIEAPGHVV--------AR 52
          MGN    R +   G A   +V+  DGR   +EE  T  AE+M+E P HVV        + 
Sbjct: 1  MGNVAGSRKLDAAGMAAGKVVLS-DGRVQNLEEETT-VAEIMLENPQHVVVEFDPSSISF 58

Query: 53 AADAAK-ERRVRAMAADEPLRAGEVYLLVPASRAGAR 88
            DA   +R++  + AD+ L  G++YL++PA R+G R
Sbjct: 59 NNDAKTVKRKLAPLPADKTLEPGKIYLVLPAKRSGGR 95



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,744,436
Number of extensions: 79029
Number of successful extensions: 171
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 73
Effective length of database: 8,611,713
Effective search space: 628655049
Effective search space used: 628655049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)