FiT-DB / Search/ Help/ Sample detail

Os01g0299500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0209) R2 : 0.54
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.02 (0.0441) R2dN8 : 0.697 R2N8 : 0.54
σ : 0.394
deviance : 71.26
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
36.21 0.283 12.5 -0.653 0.595 0.387 0.544 1.43 1.03 3.04 73.97 5996 -- --
38.84 0.29 12.5 -0.544 0.591 0.476 0.629 -- 1.09 3.07 73 7398 -- --
37.18 0.284 12.5 -0.665 0.595 0.385 -- 1.5 1.02 2.99 73.82 6042 -- --
40.12 0.295 12.5 -0.561 0.59 0.473 -- -- 1.09 3.01 73.02 7430 -- --
48.26 0.325 12.6 -0.472 -- 0.382 -- 0.533 0.963 -- 73.82 6042 -- --
42.68 0.306 12.6 -0.501 0.607 -- 0.583 -- 0.952 3.1 -- -- -- --
43.8 0.31 12.6 -0.513 0.609 -- -- -- 0.949 3.07 -- -- -- --
49.92 0.33 12.6 -0.456 -- 0.386 -- -- 0.968 -- 73.82 6042 -- --
47.76 0.322 12.5 -- 0.59 0.458 -- -- 1.13 3.01 73.03 5967 -- --
65.01 0.377 12.6 -0.487 -- -- -- -- 0.965 -- -- -- -- --
50.73 0.333 12.5 -- 0.599 -- -- -- 1.01 3.06 -- -- -- --
55.39 0.348 12.5 -- -- 0.396 -- -- 1.02 -- 73.82 6042 -- --
71.26 0.394 12.5 -- -- -- -- -- 1.02 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.89 precipitation 0.1 14400 > th dose independent rect. 4 12
2 34.91 wind 1.0 14400 < th dose independent rect. 2 6
4 34.93 precipitation 0.1 14400 < th dose independent rect. 4 12
5 34.93 precipitation 0.1 14400 < th dose dependent rect. 4 12
13 35.04 precipitation 0.1 14400 > th dose dependent rect. 5 9
20 35.11 wind 1.0 14400 > th dose independent rect. 2 6
24 35.12 wind 1.0 14400 < th dose dependent rect. 2 6
27 35.16 wind 1.0 14400 > th dose independent rect. 5 1
30 35.20 wind 1.0 14400 > th dose independent rect. 1 2
31 35.25 wind 1.0 14400 < th dose dependent rect. 2 1
33 35.31 temperature 20.0 14400 > th dose dependent rect. 8 1
43 35.40 precipitation 0.1 14400 > th dose dependent rect. 5 3
45 35.44 wind 1.0 14400 < th dose independent rect. 4 3
47 35.46 precipitation 0.1 14400 > th dose independent rect. 5 3
53 35.48 temperature 30.0 14400 < th dose dependent rect. 8 1
54 35.48 precipitation 0.1 14400 > th dose dependent rect. 4 6
56 35.50 precipitation 0.1 14400 < th dose independent rect. 5 3
57 35.50 precipitation 0.1 14400 < th dose dependent rect. 5 3
59 35.51 precipitation 0.1 14400 > th dose independent rect. 4 6
66 35.55 precipitation 0.1 14400 < th dose independent rect. 4 6
68 35.55 precipitation 0.1 14400 < th dose dependent rect. 4 6
70 35.56 precipitation 0.1 14400 > th dose independent rect. 7 7
81 35.62 wind 1.0 14400 > th dose independent rect. 4 3
103 35.68 wind 1.0 43200 > th dose dependent rect. 5 1
117 35.71 wind 7.0 43200 < th dose dependent rect. 5 1
148 35.79 temperature 20.0 14400 > th dose dependent rect. 13 1
152 35.82 wind 1.0 14400 < th dose independent rect. 5 1
180 35.87 wind 1.0 14400 < th dose dependent rect. 4 4
181 35.88 temperature 25.0 14400 < th dose independent rect. 10 1
210 35.93 humidity 90.0 14400 > th dose independent rect. 13 1
218 35.95 temperature 25.0 14400 < th dose independent rect. 6 8
248 35.99 wind 1.0 43200 < th dose dependent rect. 5 2
253 36.00 temperature 25.0 14400 > th dose independent rect. 10 1
263 36.01 temperature 20.0 14400 < th dose independent rect. 20 1
265 36.01 temperature 25.0 14400 > th dose independent rect. 6 8
269 36.02 wind 1.0 14400 < th dose independent rect. 2 1
277 36.03 humidity 80.0 43200 > th dose independent rect. 6 1
292 36.05 temperature 20.0 14400 > th dose dependent sin 1 NA
327 36.09 humidity 80.0 43200 < th dose independent rect. 6 1
360 36.13 humidity 80.0 14400 < th dose independent rect. 13 1
396 36.16 wind 7.0 43200 < th dose dependent rect. 5 3
438 36.19 humidity 90.0 4320 > th dose dependent rect. 7 2
477 36.23 humidity 70.0 14400 > th dose independent rect. 8 2
480 36.23 wind 9.0 43200 < th dose dependent rect. 7 1
488 36.24 humidity 80.0 14400 > th dose independent rect. 10 5
490 36.24 temperature 30.0 14400 < th dose dependent rect. 13 1
544 36.28 wind 1.0 43200 > th dose dependent rect. 5 3
553 36.29 humidity 80.0 14400 > th dose independent rect. 10 1
580 36.31 humidity 80.0 14400 < th dose independent rect. 10 5
593 36.32 humidity 60.0 14400 < th dose independent rect. 10 4
599 36.32 wind 1.0 43200 < th dose dependent rect. 2 9
604 36.33 precipitation 0.1 14400 > th dose independent sin 2 NA
610 36.33 wind 1.0 14400 > th dose dependent rect. 23 2
624 36.34 temperature 30.0 720 > th dose independent sin 7 NA
625 36.34 precipitation 0.1 14400 < th dose independent sin 2 NA
627 36.34 humidity 60.0 14400 < th dose independent rect. 11 2
628 36.34 precipitation 0.1 14400 < th dose independent rect. 14 2
636 36.34 precipitation 0.1 14400 < th dose dependent sin 2 NA
637 36.34 precipitation 0.1 14400 < th dose dependent rect. 14 2
700 36.38 humidity 70.0 4320 > th dose independent rect. 16 1
716 36.38 wind 1.0 43200 < th dose dependent rect. 2 11
733 36.39 humidity 60.0 4320 > th dose dependent rect. 10 4
769 36.41 temperature 25.0 14400 < th dose independent sin 2 NA
791 36.42 temperature 25.0 14400 > th dose independent sin 2 NA
795 36.42 humidity 70.0 14400 < th dose independent rect. 8 2
797 36.42 humidity 60.0 14400 > th dose independent rect. 10 3
802 36.42 wind 1.0 43200 > th dose dependent rect. 7 1
817 36.43 humidity 60.0 14400 > th dose independent rect. 11 1
869 36.45 humidity 50.0 4320 > th dose dependent rect. 13 1
870 36.45 humidity 90.0 4320 < th dose dependent rect. 13 1
891 36.46 wind 3.0 14400 < th dose independent rect. 23 2
910 36.47 precipitation 0.1 14400 < th dose independent rect. 7 1
914 36.47 temperature 30.0 14400 < th dose dependent sin 0 NA
915 36.47 precipitation 0.1 14400 < th dose dependent rect. 7 1
931 36.48 temperature 30.0 270 > th dose independent sin 3 NA
957 36.49 humidity 80.0 14400 < th dose independent rect. 10 2
958 36.49 precipitation 0.1 14400 > th dose independent rect. 14 2
970 36.49 humidity 70.0 14400 > th dose independent rect. 23 11
976 36.49 temperature 20.0 14400 > th dose dependent no NA NA
977 36.49 humidity 60.0 4320 > th dose dependent rect. 11 1
978 36.49 precipitation 0.1 14400 > th dose dependent rect. 14 2