BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0299500 Os01g0299500|AK065650
         (177 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01960.1  | chr4:851387-852441 REVERSE LENGTH=237               69   1e-12
AT3G17120.1  | chr3:5842410-5843246 FORWARD LENGTH=220             61   3e-10
AT1G02380.1  | chr1:477814-478850 FORWARD LENGTH=232               53   1e-07

>AT4G01960.1 | chr4:851387-852441 REVERSE LENGTH=237
          Length = 236

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 46/62 (74%)

Query: 113 LDAADQKLISELSELASLKRARIERMKALKKMKNTKPASSIGNLVALIITIIFCLVILWQ 172
           L A DQKL+ E++ELA  KRARIERMK L+++K  K +S   ++ A+I+T+IF + +++Q
Sbjct: 110 LSANDQKLMREITELAMRKRARIERMKTLRRLKAAKSSSPCSSIFAMIVTVIFFVFLIFQ 169

Query: 173 GL 174
           G 
Sbjct: 170 GF 171



>AT3G17120.1 | chr3:5842410-5843246 FORWARD LENGTH=220
          Length = 219

 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 47/65 (72%), Gaps = 3/65 (4%)

Query: 113 LDAADQKLISELSELASLKRARIERMK---ALKKMKNTKPASSIGNLVALIITIIFCLVI 169
           LDAADQKLI E++ELA LKRARIERM+     +  K    ASS+GN++A + T IF  V+
Sbjct: 88  LDAADQKLIREIAELAMLKRARIERMRALKKSRAAKAASAASSLGNVLATLFTAIFFFVL 147

Query: 170 LWQGL 174
           ++QGL
Sbjct: 148 VFQGL 152



>AT1G02380.1 | chr1:477814-478850 FORWARD LENGTH=232
          Length = 231

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 113 LDAADQKLISELSELASLKRARIERM-KALKKMK--NTKPASSIGNLVALIITIIFCLVI 169
           L   D+K++ ++ ELA  KRARIERM K+LK++K   T P+S    + ++IIT IF   +
Sbjct: 101 LSENDRKIMRDIQELAMRKRARIERMKKSLKRLKAAKTSPSSPCITIFSMIITAIFFAFL 160

Query: 170 LWQGL 174
           ++QG 
Sbjct: 161 VFQGF 165



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,301,872
Number of extensions: 112436
Number of successful extensions: 337
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 3
Length of query: 177
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 85
Effective length of database: 8,584,297
Effective search space: 729665245
Effective search space used: 729665245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)