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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0290300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transposase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0137) R2 : 0.00915
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0591 (0.0288) R2dN8 : 0.0118 R2N8 : 0.00915
σ : 0.257
deviance : 30.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.85 0.252 3.04 0.105 0.0652 -0.0145 -0.235 -0.704 -0.0495 6.18 1006 4165 -- --
29.8 0.254 3.04 0.072 0.0607 -0.0612 -0.182 -- -0.034 5.93 1006 3764 -- --
28.98 0.251 3.04 0.102 0.0655 -0.0165 -- -0.69 -0.0477 7.04 1006 4191 -- --
29.86 0.255 3.04 0.0711 0.061 -0.0648 -- -- -0.0328 7.02 1006 3784 -- --
29.2 0.252 3.04 0.102 -- -0.0219 -- -0.68 -0.0453 -- 1006 4191 -- --
29.93 0.256 3.05 0.0843 0.0637 -- -0.188 -- -0.0517 6.39 -- -- -- --
30.01 0.257 3.05 0.0823 0.0635 -- -- -- -0.051 6.99 -- -- -- --
30.07 0.255 3.04 0.0713 -- -0.0648 -- -- -0.0332 -- 1006 3783 -- --
30 0.255 3.04 -- 0.0627 -0.0676 -- -- -0.0377 6.98 1006 3784 -- --
30.22 0.257 3.05 0.0835 -- -- -- -- -0.0498 -- -- -- -- --
30.19 0.257 3.05 -- 0.0644 -- -- -- -0.0601 6.91 -- -- -- --
30.2 0.256 3.05 -- -- -0.0739 -- -- -0.0374 -- 1006 3784 -- --
30.41 0.257 3.05 -- -- -- -- -- -0.0591 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.99 precipitation 0.1 4320 > th dose dependent rect. 2 1
2 27.99 precipitation 0.1 4320 > th dose dependent rect. 24 3
3 28.00 temperature 25.0 270 > th dose independent rect. 20 1
4 28.00 precipitation 0.1 4320 > th dose independent rect. 2 1
5 28.01 precipitation 0.1 4320 < th dose independent rect. 2 1
6 28.01 precipitation 0.1 4320 > th dose independent rect. 24 3
7 28.01 precipitation 0.1 4320 < th dose dependent rect. 2 1
13 28.06 atmosphere 1005.0 90 > th dose independent rect. 3 2
16 28.08 atmosphere 1005.0 30 > th dose dependent rect. 3 2
24 28.25 wind 1.0 30 > th dose independent rect. 4 1
29 28.28 temperature 20.0 90 > th dose dependent rect. 22 1
32 28.31 precipitation 0.1 14400 > th dose independent rect. 23 1
33 28.31 precipitation 0.1 14400 > th dose dependent rect. 23 1
37 28.36 temperature 10.0 90 > th dose dependent rect. 3 2
38 28.37 temperature 15.0 270 > th dose dependent rect. 20 4
39 28.38 precipitation 0.1 14400 < th dose independent rect. 23 1
40 28.38 wind 5.0 90 < th dose independent rect. 3 2
41 28.38 wind 1.0 30 > th dose dependent rect. 4 1
42 28.38 precipitation 0.1 14400 < th dose dependent rect. 23 1
47 28.41 temperature 25.0 90 > th dose independent rect. 22 1
48 28.41 precipitation 0.1 90 < th dose independent rect. 5 22
49 28.41 temperature 30.0 10 < th dose dependent rect. 4 1
52 28.41 temperature 20.0 10 > th dose dependent rect. 22 2
56 28.41 precipitation 0.1 90 < th dose dependent rect. 5 22
59 28.43 humidity 90.0 10 < th dose independent rect. 4 1
62 28.44 temperature 15.0 90 > th dose independent rect. 5 22
64 28.45 wind 9.0 90 < th dose independent rect. 5 22
65 28.45 wind 9.0 90 < th dose dependent rect. 3 2
70 28.47 radiation 1.0 90 < th dose independent rect. 3 2
72 28.47 radiation 1.0 90 < th dose dependent rect. 3 2
80 28.48 temperature 10.0 270 > th dose dependent rect. 5 19
82 28.49 temperature 10.0 90 > th dose independent rect. 3 2
84 28.49 temperature 30.0 90 < th dose independent rect. 3 2
85 28.49 humidity 50.0 90 > th dose independent rect. 3 2
88 28.49 atmosphere 995.0 90 > th dose independent rect. 3 2
89 28.49 atmosphere 1010.0 90 < th dose independent rect. 3 2
94 28.49 precipitation 0.1 90 < th dose independent rect. 3 2
97 28.49 precipitation 0.1 90 < th dose dependent rect. 3 2
100 28.50 atmosphere 1005.0 10 < th dose independent rect. 22 2
105 28.51 wind 9.0 1440 < th dose independent rect. 4 2
106 28.51 temperature 10.0 1440 > th dose independent rect. 4 2
109 28.51 temperature 30.0 1440 < th dose independent rect. 4 2
113 28.51 humidity 50.0 1440 > th dose independent rect. 4 2
122 28.51 atmosphere 995.0 1440 > th dose independent rect. 4 2
123 28.51 atmosphere 1015.0 1440 < th dose independent rect. 4 2
124 28.51 radiation 20.0 1440 < th dose independent rect. 4 2
133 28.51 temperature 10.0 1440 > th dose independent rect. 6 22
139 28.52 humidity 90.0 90 < th dose independent rect. 22 1
150 28.53 temperature 15.0 270 > th dose independent rect. 5 19
164 28.55 temperature 10.0 90 > th dose dependent rect. 5 21
165 28.56 precipitation 0.1 14400 < th dose independent rect. 22 5
167 28.56 precipitation 0.1 14400 < th dose dependent rect. 22 5
170 28.57 precipitation 0.1 14400 > th dose independent rect. 21 7
178 28.58 precipitation 0.1 14400 < th dose independent rect. 21 7
180 28.58 precipitation 0.1 14400 < th dose dependent rect. 21 7
186 28.59 precipitation 0.1 720 < th dose independent rect. 5 12
190 28.59 atmosphere 1015.0 270 < th dose dependent rect. 21 2
192 28.59 precipitation 0.1 720 < th dose dependent rect. 5 12
204 28.61 atmosphere 1010.0 90 < th dose dependent rect. 23 2
206 28.61 atmosphere 1015.0 90 < th dose dependent rect. 21 4
216 28.62 radiation 1.0 270 < th dose dependent rect. 24 19
218 28.63 radiation 1.0 270 < th dose independent rect. 24 14
224 28.63 radiation 1.0 90 < th dose dependent rect. 2 19
235 28.64 radiation 1.0 270 < th dose independent rect. 24 19
244 28.64 atmosphere 1010.0 10 < th dose dependent rect. 22 4
282 28.65 humidity 50.0 90 > th dose dependent rect. 3 2
296 28.66 radiation 1.0 270 < th dose independent rect. 24 11
301 28.66 radiation 1.0 10 < th dose dependent rect. 4 1
310 28.66 temperature 10.0 270 > th dose dependent rect. 24 5
314 28.67 temperature 10.0 10 > th dose independent rect. 4 1
317 28.67 humidity 50.0 10 > th dose independent rect. 4 1
320 28.67 atmosphere 995.0 10 > th dose independent rect. 4 1
321 28.67 atmosphere 1010.0 10 < th dose independent rect. 4 1
323 28.67 radiation 1.0 10 < th dose independent rect. 4 1
334 28.67 radiation 1.0 90 < th dose independent rect. 2 19
335 28.67 temperature 10.0 10 > th dose independent rect. 5 23
346 28.67 atmosphere 995.0 270 > th dose dependent rect. 24 5
351 28.68 wind 1.0 90 > th dose independent rect. 22 1
363 28.68 precipitation 0.1 270 < th dose independent rect. 20 13
376 28.68 radiation 10.0 270 < th dose dependent rect. 24 11
377 28.68 precipitation 0.1 270 < th dose dependent rect. 20 13
378 28.68 radiation 1.0 270 < th dose dependent rect. 24 14
383 28.69 precipitation 0.1 10 < th dose independent rect. 4 1
388 28.69 precipitation 0.1 270 < th dose independent rect. 5 19
390 28.69 precipitation 0.1 10 < th dose dependent rect. 4 1
399 28.69 precipitation 0.1 270 < th dose dependent rect. 5 19
424 28.70 wind 1.0 90 > th dose independent rect. 5 21
444 28.71 temperature 25.0 10 > th dose independent rect. 4 1
450 28.71 atmosphere 1005.0 10 > th dose independent rect. 19 10
451 28.71 temperature 15.0 270 > th dose independent rect. 20 14
453 28.71 humidity 50.0 10 > th dose dependent rect. 4 1
479 28.72 wind 9.0 10 < th dose dependent rect. 4 1
480 28.72 temperature 25.0 30 > th dose dependent rect. 4 1
521 28.74 wind 1.0 270 > th dose independent rect. 5 19
525 28.74 atmosphere 1015.0 10 < th dose dependent rect. 4 1
526 28.74 atmosphere 1010.0 10 < th dose dependent rect. 24 1
545 28.75 wind 5.0 270 < th dose independent rect. 24 5
549 28.75 wind 7.0 270 < th dose independent rect. 20 14
599 28.77 temperature 10.0 270 > th dose independent rect. 9 11
600 28.77 atmosphere 1015.0 270 < th dose independent rect. 9 11
604 28.77 humidity 50.0 270 > th dose independent rect. 20 13
605 28.77 atmosphere 995.0 270 > th dose independent rect. 20 13
606 28.77 radiation 40.0 270 < th dose independent rect. 20 13
608 28.77 wind 7.0 270 < th dose independent rect. 5 19
635 28.78 radiation 10.0 10 < th dose independent rect. 2 6
638 28.78 atmosphere 995.0 270 > th dose independent rect. 10 10
642 28.78 atmosphere 1005.0 270 > th dose independent rect. 11 18
648 28.78 temperature 10.0 10 > th dose dependent rect. 4 1
678 28.79 temperature 30.0 270 < th dose independent rect. 20 13
679 28.79 wind 1.0 90 > th dose independent rect. 22 14
681 28.79 atmosphere 1005.0 270 > th dose independent rect. 15 14
728 28.80 radiation 1.0 270 < th dose independent rect. 24 5
733 28.80 humidity 80.0 10 > th dose independent rect. 2 10
739 28.80 atmosphere 1005.0 270 > th dose independent rect. 13 16
770 28.81 atmosphere 1005.0 4320 > th dose independent rect. 23 1
790 28.81 radiation 10.0 10 < th dose independent rect. 2 4
792 28.81 temperature 10.0 270 > th dose independent rect. 24 5
794 28.81 temperature 30.0 270 < th dose independent rect. 24 5
795 28.81 humidity 50.0 270 > th dose independent rect. 24 5
799 28.81 atmosphere 995.0 270 > th dose independent rect. 24 5
800 28.81 atmosphere 1005.0 270 < th dose independent rect. 19 5
801 28.81 atmosphere 1010.0 270 < th dose independent rect. 24 5
821 28.81 atmosphere 995.0 90 > th dose independent rect. 5 22
841 28.81 radiation 1.0 270 < th dose dependent rect. 24 5
846 28.81 radiation 1.0 90 < th dose dependent rect. 2 13
868 28.82 wind 9.0 270 < th dose independent rect. 9 11
893 28.82 wind 9.0 270 < th dose dependent rect. 24 5
948 28.83 humidity 80.0 10 > th dose independent rect. 2 20
975 28.83 radiation 20.0 10 < th dose dependent rect. 2 6