BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0290300 Os01g0290300|Os01g0290300
         (751 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42170.1  | chr3:14321838-14323928 FORWARD LENGTH=697          273   3e-73
AT1G18560.1  | chr1:6385614-6388005 FORWARD LENGTH=691            125   7e-29

>AT3G42170.1 | chr3:14321838-14323928 FORWARD LENGTH=697
          Length = 696

 Score =  273 bits (698), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 173/640 (27%), Positives = 302/640 (47%), Gaps = 51/640 (7%)

Query: 111 RGKRAECWKHFKVINVPSKKERGVMVAKAKCKFCHRSYVYHPGGATTTLNRHLAGCTQYQ 170
           R K++  W+HF +  V     R      A CK C++S+ Y  G         +AG +  +
Sbjct: 64  RKKKSMVWEHFTIEAVEPNCRR------AFCKGCNQSFAYSNGN-------KVAGTSHLK 110

Query: 171 NKLTKAKAQGTLNFGPEDDNSLIVNP---------------------TEYNHEHTRELIA 209
             + K      ++    D+N L+  P                       +N +  R+ IA
Sbjct: 111 RHIFKGTCPALIHTHDNDNNPLMSTPYTPKTDTPRRRYRSQNNASPYVAFNQDKCRQEIA 170

Query: 210 KMIIAHEYSFRMVEHKWFNILMKWMNGNYEFIGRKSIKNECMRVYESEKNQLKKSLKEAE 269
           KMII H+Y   MV+H  F   ++ +  +++ +   +++ +C+  Y +EK  + KSL+   
Sbjct: 171 KMIIMHDYPLHMVQHPGFVSFVQSIQPHFDAVSFNNVQGDCVATYLAEKQNVMKSLEGIP 230

Query: 270 S-ISLTTDLWTSNQNLQYMCLVAHYIDENWVMQCRVLNFIEVDPPHTGIVIAQAVFECMV 328
               LT D WTS   L Y+ + AHYID +W +Q ++LN +    P     ++ AV  C+ 
Sbjct: 231 GRFCLTLDFWTSKLTLGYVFITAHYIDSDWKIQKKLLNVLMESYPEADEALSLAVANCVS 290

Query: 329 EWKIEDKVXXXXXXXXXXXXXXXXXXKAKLLARKNSVFDPSYFHIRCAAHIVNLVVNDGL 388
           EW +E K+                  + +L  +   + D       C A     +  D L
Sbjct: 291 EWGLEGKLFNVTFNHPASNSAVENI-RPQLCIKNPGILDGQLVIGNCVARTFGSLAKDVL 349

Query: 389 QPIDNLISCLRNTVKYFKRSPSRMYKFVEVCNNYSVKVGRGLALDVKTRWNSTYKMLDTC 448
           +   ++I  +R++VK+ K S S   +F E+     V   + L+LD +T+WN+TY ML   
Sbjct: 350 EKGKDVIKNIRDSVKHVKTSESHEERFTELKEQLQVPSEKVLSLDDQTQWNTTYMMLVAA 409

Query: 449 IDYKDAFGYYKEVDTSYVWKPSDSDWVSFGKIRPILGTMAEASTAFSGSLYPTANCFYPY 508
            + K+ F      D  Y   PS  DW     +   L  + EA +    +  P+A  F+  
Sbjct: 410 SELKEVFSCLDTADPDYKKPPSAEDWRHVEALCTFLKPLFEAVSTLQSTGNPSAVTFFHE 469

Query: 509 IVKVKRALIEAQKSEDTYLRSMGAAMLDKFDKYWEEKNNVMVIATILDPRFKMRYIKWCF 568
           + K +  L  A   ED ++  +   M +K DKYW + + V+ +A ++DPRFKM+ +++ F
Sbjct: 470 VWKTQSDLSRAIAGEDPFVTGIAKTMQEKVDKYWRDCSLVLAMAVVMDPRFKMKLVEFSF 529

Query: 569 AQIFDPIRCEIEINDINQELERLYNKYEILHRQKMGENGTNRQSTSASVDTTSSMASIAS 628
           ++IF     +  I  ++  +  L+ +Y  L          + Q+T++        A   S
Sbjct: 530 SKIFGEDAGK-NIKTVDDGIHELFTEYMAL---------PSPQNTTSE----GGKADGLS 575

Query: 629 DFQSFLQSTVTESSKSELLIYLDEANEAIDNKHFNLLRYWNVNCHRFPVVSSLAKRFLTV 688
           DF +++  T  ++ KSEL  YLDE       + F++L +W  N  ++P +S +A+  L++
Sbjct: 576 DFDTYIMETTGQNLKSELDQYLDET-LLPRVQEFDVLDWWKQNKLKYPTLSKMARDILSI 634

Query: 689 PVSSVSSECTFSTAGRVLDDYRSSLKPATVQALVCASSWI 728
           PVS+ + +  F    R +D+Y++SL+P TV+AL+CA  W+
Sbjct: 635 PVSAAAFDYVFDMEPREMDEYKTSLRPETVEALICAREWL 674



>AT1G18560.1 | chr1:6385614-6388005 FORWARD LENGTH=691
          Length = 690

 Score =  125 bits (315), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 135/607 (22%), Positives = 243/607 (40%), Gaps = 42/607 (6%)

Query: 140 KCKFCHRSYVYHPGGATTTLNRHLAGCTQYQNKLTKAKAQGTLNFGPEDDNSLIVNPTE- 198
           KCKFC +SY      AT  L RHL   T       KA A    +         +V P++ 
Sbjct: 71  KCKFCGQSYSI--ATATGNLGRHL---TNRHPGYDKAAADVVTSSSVPQTPPAVVKPSQS 125

Query: 199 ------YNHEHTRELIAKMIIAHEYSFRMVEHKWFNILMKWMNGNYEFIGRKSIKNECMR 252
                  +++H   L+ K +         V+  W     K++  + +    +  K     
Sbjct: 126 QSKVPQLDYDHLNWLVLKWLALSSLPPSTVDETWLGNSFKFLKPSIQLWPAEKYKAILDE 185

Query: 253 VYESEKNQLKKSLKEAES-ISLTTDLWTSNQNLQYMCLVAHYIDENWVMQCRVLNFIEVD 311
           V+ S +  +K +L+  +S +S+T   W S +N+ YM +   +IDENW     +L+   + 
Sbjct: 186 VFTSMRGDVKTTLEHIQSKVSVTLSFWNSYENIFYMSVTGQWIDENWSSHRLLLDICRIP 245

Query: 312 PPHTGIVIAQAVFECMVEWKIEDKVXXXXXXXXXXXXXXXXXXKAKLLARKNSVFDPSYF 371
            P  G  I  ++ + +  + IED++                  K     +K   F     
Sbjct: 246 YPSGGSEIYNSLLKVLKTYAIEDRILCCTHDNSENAIHACHSLKEYFDGQKVLPF----C 301

Query: 372 HIRCAAHIVNLVVNDGLQPIDNLISCLRNTVKYFKRSPSRMYKFVEVCNNYSVKVGRGLA 431
           +I CAA  +N ++++GL  I  +IS +R   +    S      F+++   Y  +    L 
Sbjct: 302 YIPCAAQTLNDIIDEGLATIKPIISKVREFTQELNASTELSDDFIQLTTAYQ-EGNWKLP 360

Query: 432 LDVKTRWNSTYKMLDT-CIDYKDAFGYYKE----VDTSYVWKPSDSDWVSFGKIRPILGT 486
           +D  +RW+  Y+M++  C   K      ++    ++   +    + + V+       L +
Sbjct: 361 IDASSRWSGNYQMVNILCKASKSLDSVIRKNEDALENRMMLSSVEKNAVTIVHNYLDLDS 420

Query: 487 MAEASTAFSGSLYPTANCFYPYIVKVKRALIEAQKS--EDTYLRSMGAAMLDKFDKYWEE 544
             + +     +   T      ++  +   +   QKS     +LR+   +M  K   Y  +
Sbjct: 421 FHKTTNDMCTNKDLTVGLALLFMDNISEMITTCQKSCHNPDWLRTCAESMAQKARSYNTQ 480

Query: 545 KNNVMV-IATILDPRFKMRYIKWCFAQIFDPIRCEIEINDINQELERLYNKYEILHRQKM 603
             NV   I  ILDPR K  YI        + I  E  I++      R Y+     H    
Sbjct: 481 VCNVFTYITAILDPRIKTEYIP-------ETINLESYIDEARSHFIRNYSSS---HFTSS 530

Query: 604 GENGTNRQSTSASVDTTSSMASIASDFQSFLQSTVTESSKSELLIYLDEANEAIDNKHFN 663
             +G   Q         S    IA   +   + +++ +   EL  YL   +E+I     +
Sbjct: 531 MTSGYRPQEVDEGGGNISFAEEIARRKR---RGSMSNNVVDELTQYL---SESIVPMQTD 584

Query: 664 LLRYWNVNCHRFPVVSSLAKRFLTVPVSSVSSECTFSTAGRVLDDYRSSLKPATVQALVC 723
           +L +W VN  R+P +S++A+ FL V  +S + E  F   G  +D  +  +   + Q+++C
Sbjct: 585 VLDWWKVNSGRYPRLSNMARDFLAVQATSAAPEEIFCGKGEEIDKQKYCMPHDSTQSVIC 644

Query: 724 ASSWIRG 730
             SWI  
Sbjct: 645 IRSWIEA 651



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 16,013,996
Number of extensions: 643582
Number of successful extensions: 2089
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2079
Number of HSP's successfully gapped: 3
Length of query: 751
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 645
Effective length of database: 8,200,473
Effective search space: 5289305085
Effective search space used: 5289305085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 116 (49.3 bits)