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Os01g0286000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Snf7 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.9 (0.0247) R2 : 0.737
β1 : -2.37 (0.0907) R2dD : 0.408 R2D : 0.353
β2 : 1.53 (0.0608) R2dC : 0.366 R2C : 0.339
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.282 (0.0529) R2dN8 : 0.022 R2N8 : -0.0184
σ : 0.466
deviance : 98.83
__
_____
C
peak time of C : 2.54
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.81 0.393 8.95 -2.6 1.54 1.83 1.07 3.93 -0.186 2.49 0.6256 5771 -- --
80.18 0.417 8.89 -2.12 1.7 1.41 0.595 -- -0.0672 1.83 1.65 8314 -- --
69.74 0.389 8.96 -2.6 1.13 2.08 -- 4.41 -0.203 2.72 0.5388 6013 -- --
82.82 0.424 8.86 -1.96 1.3 1.57 -- -- 0.00233 1.67 1.987 12016 -- --
97.53 0.46 8.92 -2.59 -- 2.73 -- 4.65 -0.0993 -- 0.8346 4733 -- --
95.28 0.458 8.9 -2.34 1.53 -- 0.997 -- -0.276 2.49 -- -- -- --
98.83 0.466 8.9 -2.37 1.53 -- -- -- -0.282 2.54 -- -- -- --
121.45 0.513 8.82 -1.85 -- 2.33 -- -- 0.107 -- 2.16 4733 -- --
80.71 0.418 8.72 -- 1.56 1.98 -- -- 0.53 2.54 9.082e-07 47520 -- --
236.31 0.718 8.89 -2.3 -- -- -- -- -0.244 -- -- -- -- --
246.74 0.735 8.84 -- 1.48 -- -- -- -0.0182 2.51 -- -- -- --
198.73 0.657 8.78 -- -- 2.9 -- -- 0.292 -- 0.7703 4727 -- --
376.33 0.905 8.84 -- -- -- -- -- 0.0118 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 63.56 humidity 80 43200 > th dose independent rect. 12 2
2 63.73 humidity 80 43200 > th dose dependent rect. 10 5
4 63.80 humidity 80 43200 > th dose independent rect. 10 4
5 63.85 humidity 80 43200 > th dose dependent rect. 2 16
8 63.90 humidity 80 43200 < th dose independent rect. 12 2
12 63.99 temperature 15 43200 > th dose independent rect. 23 2
36 64.23 radiation 30 43200 > th dose dependent rect. 16 16
38 64.27 humidity 80 43200 > th dose dependent rect. 3 13
54 64.32 humidity 80 43200 > th dose dependent rect. 10 1
55 64.34 radiation 1 43200 > th dose independent rect. 10 2
62 64.36 humidity 80 43200 > th dose dependent sin 3 NA
63 64.37 temperature 15 43200 < th dose independent rect. 2 1
67 64.38 radiation 30 43200 > th dose dependent rect. 7 1
83 64.40 temperature 15 43200 < th dose independent rect. 23 4
84 64.40 temperature 15 43200 < th dose independent rect. 23 6
85 64.41 radiation 1 43200 < th dose dependent rect. 9 3
91 64.45 radiation 1 43200 < th dose independent rect. 10 2
113 64.53 temperature 15 43200 < th dose independent rect. 23 1
146 64.70 temperature 15 43200 > th dose independent rect. 23 13
175 64.81 radiation 1 43200 < th dose dependent rect. 8 5
200 64.87 humidity 90 43200 > th dose independent rect. 23 19
201 64.87 humidity 90 43200 > th dose independent rect. 23 21
202 64.87 humidity 80 43200 > th dose dependent rect. 9 17
208 64.89 temperature 15 43200 > th dose independent sin 8 NA
232 64.93 humidity 80 43200 > th dose dependent rect. 8 19
235 64.94 humidity 90 43200 > th dose independent rect. 7 21
242 64.96 humidity 80 43200 < th dose independent rect. 15 1
257 64.99 radiation 40 43200 < th dose independent rect. 17 15
293 65.04 radiation 40 43200 < th dose independent rect. 6 2
326 65.08 radiation 40 43200 < th dose independent rect. 22 10
347 65.11 humidity 90 43200 > th dose independent rect. 13 23
353 65.12 radiation 40 43200 < th dose independent rect. 24 8
357 65.13 humidity 90 43200 > th dose independent no NA NA
360 65.13 humidity 90 43200 > th dose independent rect. 3 23
363 65.13 temperature 15 43200 < th dose dependent rect. 23 6
370 65.14 humidity 90 43200 > th dose independent rect. 9 23
394 65.16 temperature 15 43200 < th dose dependent rect. 1 1
423 65.18 temperature 20 43200 < th dose dependent rect. 11 1
425 65.19 temperature 15 43200 < th dose independent rect. 23 13
452 65.21 humidity 90 43200 < th dose independent rect. 24 20
559 65.33 humidity 90 43200 > th dose independent sin 4 NA
604 65.38 temperature 15 43200 < th dose independent sin 9 NA
636 65.41 humidity 90 43200 > th dose independent sin 17 NA
653 65.42 humidity 90 43200 < th dose independent rect. 7 21
667 65.43 temperature 20 43200 < th dose dependent rect. 11 4
676 65.44 humidity 80 43200 > th dose dependent sin 18 NA
757 65.51 humidity 90 43200 < th dose independent rect. 2 23
772 65.52 humidity 90 43200 > th dose dependent rect. 3 7
797 65.54 humidity 90 43200 > th dose dependent no NA NA
801 65.54 humidity 90 43200 > th dose dependent rect. 10 23
802 65.54 humidity 90 43200 > th dose dependent rect. 19 23
836 65.57 humidity 90 43200 < th dose independent no NA NA
852 65.57 humidity 90 43200 > th dose dependent rect. 13 23
876 65.59 humidity 90 43200 < th dose independent rect. 13 23
895 65.60 temperature 20 43200 < th dose dependent rect. 14 1
911 65.61 humidity 90 43200 < th dose independent rect. 16 23
922 65.62 temperature 15 43200 > th dose independent rect. 9 21
937 65.63 temperature 15 43200 > th dose independent rect. 11 19
973 65.65 temperature 30 720 < th dose dependent rect. 1 10