BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0286000 Os01g0286000|AK109824
         (419 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62080.2  | chr3:22986191-22988517 FORWARD LENGTH=463          230   8e-61

>AT3G62080.2 | chr3:22986191-22988517 FORWARD LENGTH=463
          Length = 462

 Score =  230 bits (587), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 126/326 (38%), Positives = 197/326 (60%), Gaps = 8/326 (2%)

Query: 35  ARFKAFTGQRRDWPQPKLLFWKGXXXXXXXXXXXCSAPARLVLGVWFARPGGLTPLCLPQ 94
           ARFKAF+GQR DW + K  FW+                   V   WF R GG+TPLC+  
Sbjct: 64  ARFKAFSGQRSDW-ELKFQFWRDLIIKVSRQFGLFIIDPVQVKKAWFDR-GGMTPLCIDD 121

Query: 95  VLEEMRADGEILLKSELIDPTTGSLYQLVRRMSQMAVISKQPIAQDDIL----VFKSLIE 150
           V+  M ++G+++  S+L DP +G + +L+R +  + V  +QP+ Q++IL    V   L++
Sbjct: 122 VVLLMHSEGDVVRISDLDDPGSGRIARLLRTVKNLMV--QQPVKQEEILENTLVLVPLLK 179

Query: 151 ERAAEIVDQLRNSHWTSTCIVTISKFNAFFHGQEDSHVALCYLTQCGKARYIVDRRQDSV 210
           E+AA++V  L   HWTSTC+VT+ KF    +G  ++   L +L+ CGKA  I   R + +
Sbjct: 180 EKAADVVKILSEGHWTSTCVVTLKKFRNLCNGSNEASAVLSHLSGCGKAHKISINRGELI 239

Query: 211 EGVKFSLMAAQVPAVSKLDHNTLHLILTEEKLQQQLDVLDRQWQISRRRALVSFKSGDKQ 270
           EGVK S     +P +S LD + LHL+ T EKLQ QL+V+D++ + S++ AL S KSG ++
Sbjct: 240 EGVKVSFSQTALPGISTLDCDILHLLRTTEKLQDQLEVMDQRCEKSKKSALASLKSGHRK 299

Query: 271 SAYRYVRQSKLFSESRKRFTPLLERVEEVISLIASAETTKKVNEAIKVSIQAMXXXXXXX 330
            A R+ R+ K+ +ESR++ T LL RVEEV++ IA +E+TK V+EAIK   + M       
Sbjct: 300 VALRHARELKVVTESREKCTSLLNRVEEVLNTIADSESTKMVSEAIKTGARVMKDIKISA 359

Query: 331 XXXXXXLKEVDDLVATQREIDAALGS 356
                 L+E+++ + +Q++++ AL S
Sbjct: 360 DDVHDYLEELEETIESQKQVEKALES 385



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,859,925
Number of extensions: 298658
Number of successful extensions: 943
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 941
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 318
Effective length of database: 8,337,553
Effective search space: 2651341854
Effective search space used: 2651341854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)