Os01g0281600 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0281600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plastocyanin-like domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	6.38	(0.0942)	R²	:	0.582
β₁	:	-7.91	(0.351)	R²_dD	:	0.503	R²_D	:	0.308
β₂	:	0.842	(0.246)	R²_dC	:	0.0109	R²_C	:	-0.00245
β₃	:	4.11	(0.28)	R²_dE	:	0.211	R²_E	:	0.0741
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-1.07	(0.202)	R²_dN8	:	0.0348	R²_N8	:	0.00631
σ	:	1.76
deviance	:	1426.17
__

_____

C
peak time of C	:	18.6
E
wheather	:	temperature
threshold	:	27.37
memory length	:	1057
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	sin
peak or start time of G	:	7.69
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
1404.14	1.76	6.53	-9.14	0.853	4.85	-2.85	-6.8	-1.25	17.8	27.17	1061	7.93	--
1408.98	1.75	6.37	-8.01	0.809	4.11	-2.68	--	-1.07	18	27.39	1054	8.07	--
1422.9	1.76	6.5	-8.87	0.863	4.76	--	-5.55	-1.2	18.2	27.22	1058	7.84	--
1426.17	1.76	6.38	-7.91	0.842	4.11	--	--	-1.07	18.6	27.37	1057	7.69	--
1454.48	1.78	6.48	-8.88	--	4.55	--	-5.53	-1.18	--	27.68	1058	8.62	--
2047.77	2.12	6.46	-6.89	0.969	--	1.28	--	-1.43	23.5	--	--	--	--
2051.95	2.12	6.47	-6.94	0.997	--	--	--	-1.43	22.6	--	--	--	--
1457.67	1.78	6.35	-7.89	--	4.03	--	--	-1.04	--	27.65	1011	8.2	--
2989.95	2.55	6.18	--	0.79	2.83	--	--	-0.189	19.6	30.57	976	5.97	--
2113.16	2.15	6.44	-6.92	--	--	--	--	-1.43	--	--	--	--	--
3320.97	2.7	6.29	--	0.957	--	--	--	-0.66	22.1	--	--	--	--
3016.99	2.56	6.15	--	--	2.87	--	--	-0.148	--	30.23	959	6.29	--
3376.41	2.71	6.27	--	--	--	--	--	-0.66	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	1481.15	temperature	30	720	> th	dose independent	rect.	17	16
2	1481.31	temperature	30	1440	> th	dose dependent	sin	12	NA
4	1482.72	temperature	30	720	> th	dose independent	rect.	17	2
18	1483.26	temperature	30	1440	> th	dose dependent	rect.	15	4
35	1485.09	humidity	70	720	< th	dose independent	rect.	17	3
62	1486.24	temperature	25	720	> th	dose dependent	rect.	17	16
84	1488.82	temperature	30	720	< th	dose independent	rect.	17	16
107	1492.50	humidity	80	720	< th	dose dependent	rect.	17	4
110	1493.54	humidity	70	720	> th	dose independent	rect.	17	14
122	1497.76	radiation	20	1440	> th	dose independent	rect.	16	15
123	1498.04	humidity	70	1440	< th	dose dependent	rect.	16	15
154	1499.64	humidity	70	720	> th	dose independent	sin	12	NA
243	1505.42	radiation	20	1440	> th	dose independent	rect.	16	1
259	1505.49	temperature	30	1440	> th	dose independent	sin	12	NA
281	1506.79	humidity	70	720	< th	dose independent	sin	12	NA
294	1507.04	temperature	30	1440	> th	dose dependent	no	NA	NA
406	1508.46	temperature	30	1440	< th	dose independent	sin	12	NA
428	1510.77	radiation	20	1440	< th	dose independent	rect.	16	1
435	1512.05	temperature	30	1440	< th	dose independent	rect.	17	11
436	1512.13	temperature	30	1440	< th	dose independent	rect.	17	8
441	1512.40	temperature	30	1440	< th	dose independent	rect.	17	5
447	1512.57	temperature	30	1440	< th	dose independent	rect.	17	3
453	1512.95	temperature	30	1440	< th	dose independent	rect.	17	14
524	1516.50	humidity	50	1440	< th	dose independent	rect.	16	1
525	1516.63	radiation	20	1440	< th	dose independent	rect.	16	6
536	1517.71	radiation	20	1440	< th	dose independent	rect.	16	8
552	1518.20	humidity	50	1440	> th	dose independent	rect.	16	1
574	1518.76	humidity	70	720	> th	dose independent	rect.	18	9
592	1519.84	radiation	20	1440	< th	dose independent	rect.	16	12
625	1522.86	temperature	30	1440	> th	dose independent	rect.	15	19
631	1523.91	temperature	30	1440	< th	dose independent	rect.	15	19
654	1525.12	radiation	20	1440	< th	dose independent	rect.	16	15
719	1527.76	humidity	60	1440	> th	dose independent	rect.	16	3
723	1528.52	radiation	20	1440	> th	dose dependent	rect.	16	16
741	1529.04	humidity	60	1440	> th	dose independent	rect.	16	6
757	1529.31	humidity	60	1440	> th	dose independent	rect.	16	12
808	1531.92	humidity	70	1440	< th	dose dependent	sin	12	NA
888	1535.93	radiation	30	1440	> th	dose independent	rect.	7	1