BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0281600 Os01g0281600|AK062646
(251 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08500.1 | chr1:2689110-2689881 FORWARD LENGTH=229 169 1e-42
AT5G15350.1 | chr5:4985184-4986154 REVERSE LENGTH=173 54 1e-07
AT3G27200.1 | chr3:10043738-10044340 REVERSE LENGTH=175 52 2e-07
AT1G45063.1 | chr1:17033335-17034886 REVERSE LENGTH=370 49 2e-06
AT3G01070.1 | chr3:19659-20444 FORWARD LENGTH=168 49 3e-06
AT5G07475.1 | chr5:2364827-2365536 REVERSE LENGTH=193 49 4e-06
AT1G17800.1 | chr1:6128828-6129391 FORWARD LENGTH=141 48 5e-06
AT1G79800.1 | chr1:30018549-30019217 FORWARD LENGTH=193 47 9e-06
>AT1G08500.1 | chr1:2689110-2689881 FORWARD LENGTH=229
Length = 228
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 97/127 (76%), Gaps = 1/127 (0%)
Query: 42 YKNYTVGDDKGWYDGLTHPGVDYQEWADGKNFSLGDFLIFNTDKNHSVVQTRNETLYKSC 101
YKNYTVG+ GW+D P +YQ+WAD K+FSLGDFLIFNTD NHSVVQT + YK C
Sbjct: 27 YKNYTVGESTGWFDIQERPSANYQKWADSKSFSLGDFLIFNTDSNHSVVQTYDFKTYKDC 86
Query: 102 DYNDSGPDDTVEWSAAAPEFSKDA-VTVAVPLLKEGSSYFFSGNYDGEQCESGQRFAIAV 160
DY+++ +DT EWSAA P + V+++VPL+KEGS+YFFSGNYDGEQC+ GQ F I V
Sbjct: 87 DYDNNENNDTTEWSAANPSATSPVPVSISVPLVKEGSNYFFSGNYDGEQCKFGQHFMINV 146
Query: 161 AHGQGLP 167
HGQGLP
Sbjct: 147 THGQGLP 153
>AT5G15350.1 | chr5:4985184-4986154 REVERSE LENGTH=173
Length = 172
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 22/126 (17%)
Query: 43 KNYTVGDDKGWYDGLTHPGVDYQEWADGKNFSLGDFLIFNTDKNHSVVQTRNETLYKSCD 102
K YTVG++K W +P ++Y WA GK+F LGD+L F D+N + N+T Y+ C
Sbjct: 27 KKYTVGENKFW-----NPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCI 81
Query: 103 YNDSGPDDTVEWSAAAPEFSKDAVTVAVPLLKEGSSYFFSGNYDGEQCESGQRFAIAVAH 162
+ W+ A +D VT L + Y+ G C G + ++ V
Sbjct: 82 ADHP----IRNWTRGA---GRDIVT-----LNQTKHYYLLDGKGG--CYGGMKLSVKV-- 125
Query: 163 GQGLPP 168
+ LPP
Sbjct: 126 -EKLPP 130
>AT3G27200.1 | chr3:10043738-10044340 REVERSE LENGTH=175
Length = 174
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 32/123 (26%)
Query: 45 YTVGDDKGWYDGLTHPGVDYQEWADGKNFSLGDFLIFNTDKNHSVVQTRNETLYKSCDYN 104
+ +G +GW VD+ W+ ++F +GD ++F + HSVV+ +ET YKSCD
Sbjct: 26 HVIGGSQGW-----EQSVDFDSWSSDQSFKVGDQIVFKYSELHSVVELGSETAYKSCDLG 80
Query: 105 ------DSGPDDTVEWSAAAPEFSKDAVTVAVPLLKEGSSYFFSGNYDGEQCESGQRFAI 158
SG D V L K G+ YF G CE G + +
Sbjct: 81 TSVNSLSSGND-------------------VVKLSKTGTRYFACGTVG--HCEQGMKIKV 119
Query: 159 AVA 161
V
Sbjct: 120 NVV 122
>AT1G45063.1 | chr1:17033335-17034886 REVERSE LENGTH=370
Length = 369
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 49/119 (41%), Gaps = 20/119 (16%)
Query: 45 YTVGDDKGWYDGLTHPGVDYQEWADGKNFSLGDFLIFNTDKN-HSVVQTRNETLYKSCDY 103
Y VGD GW T Y W + K +GD LIF D N + V Q Y+ CD
Sbjct: 29 YKVGDSDGW----TAKDHLYYHWTEDKEIHVGDSLIFEYDHNLNDVTQVSGGLEYEFCD- 83
Query: 104 NDSGPDDTVEWSAAAPEFSKDAVTVAVPLLKEGSSYFFSGNYDGEQCESGQRFAIAVAH 162
S P A D VT P GS YF + N+ QC SGQR + V H
Sbjct: 84 -SSFP-------KAVYNTGHDVVTFTEP----GSYYFITSNH--TQCTSGQRLGVFVVH 128
>AT3G01070.1 | chr3:19659-20444 FORWARD LENGTH=168
Length = 167
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 43 KNYTVGDDKGWYDGLTHPGVDYQEWADGKNFSLGDFLIFNTDKNHSVVQTRNETLYKSCD 102
K +TVGD+K W +P ++Y WA K+F L D+L F ++N V NET Y SC+
Sbjct: 25 KRWTVGDNKFW-----NPNINYTIWAQDKHFYLDDWLYFVYERNQYNVIEVNETNYISCN 79
Query: 103 YND 105
N+
Sbjct: 80 PNN 82
>AT5G07475.1 | chr5:2364827-2365536 REVERSE LENGTH=193
Length = 192
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 21/116 (18%)
Query: 45 YTVGDDKGWYDGLTHPGVDYQEWADGKNFSLGDFLIFNTDKNHSVVQTRNETLYKSCDYN 104
Y VGD GW D + W GK FS GD L+F HSV + + Y++C+
Sbjct: 30 YFVGDSSGW-----DISSDLESWTSGKRFSPGDVLMFQYSSTHSVYEVAKDN-YQNCNTT 83
Query: 105 DSGPDDTVEWSAAAPEFSKDAVTVAVPLLKEGSSYFFSGNYDGEQCESGQRFAIAV 160
D A F+ TVA L K G+ +F GN C +G R + V
Sbjct: 84 D-----------AIRTFTNGNTTVA--LSKPGNRFFVCGNR--LHCFAGMRLLVNV 124
>AT1G17800.1 | chr1:6128828-6129391 FORWARD LENGTH=141
Length = 140
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 47/115 (40%), Gaps = 20/115 (17%)
Query: 44 NYTVGDDKGWYDGLTHPGVDYQEWADGKNFSLGDFLIFNTDKNHSVVQTRNETLYKSCDY 103
Y VG D GW P V WA GK F GD L F D + N T Y++C+
Sbjct: 40 TYIVGGDDGW-----DPVVPMDTWARGKTFYAGDILEFKYDYQRFNLIVVNRTGYETCEA 94
Query: 104 NDSGPDDTVEWSAAAPEFSKDAVTVAVPLLKEGSSYFFSGNYDGEQCESGQRFAI 158
N +E+S+ + L G +YF G Y E C +G + AI
Sbjct: 95 NVGA----IEYSSGDDKIQ----------LNYGYNYFI-GTYTPEDCTTGLKMAI 134
>AT1G79800.1 | chr1:30018549-30019217 FORWARD LENGTH=193
Length = 192
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 43 KNYTVGDDKGWYDGLTHPGVDYQEWADGKNFSLGDFLIFNTDKNHSVVQTRNETLYKSCD 102
+++ VGD+ GW L + Y WA F +GD L F DK+ SV++ Y
Sbjct: 32 RDFKVGDEFGWRVPLQNDSAVYSHWASSNRFHIGDSLSFVYDKD-SVMEVDKWGFYHC-- 88
Query: 103 YNDSGPDDTVEWSAAAPEFSKDAVTVAVPLLKEGSSYFFSGNYDGEQCESGQRFAIAVAH 162
+G D + F D + G YF SG+ + C SGQR + V H
Sbjct: 89 ---NGSDPITAFDNGNSTFDLD---------RPGLFYFISGS--NQHCTSGQRLIVEVMH 134
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,333,064
Number of extensions: 168175
Number of successful extensions: 343
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 8
Length of query: 251
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 155
Effective length of database: 8,474,633
Effective search space: 1313568115
Effective search space used: 1313568115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)