FiT-DB / Search/ Help/ Sample detail

Os01g0279400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Major facilitator superfamily antiporter.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0329) R2 : 0.817
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.92 (0.0931) R2dE : 0.728 R2E : 0.766
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.68 (0.0699) R2dN8 : 0.0502 R2N8 : 0.0884
σ : 0.617
deviance : 175.38
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 12.38
memory length : 336
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.000411
open length of G : 7.95

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
163.45 0.601 12.5 -0.554 0.886 -3.18 0.59 1.55 -0.782 18.8 15.04 290 0.866 7.1
163.56 0.596 12.6 -0.685 0.786 -3.24 -0.232 -- -0.806 18.2 14.28 293 0.817 7.28
163.72 0.596 12.6 -0.62 0.856 -3.15 -- 1.16 -0.828 18.6 14.27 291 0.833 7.21
162.73 0.594 12.6 -0.694 0.546 -3.43 -- -- -0.804 17.6 13.43 309 0.517 7.65
175.52 0.617 12.5 -0.52 -- -3.59 -- 1.09 -0.724 -- 13.42 259 0.93 7.58
283.54 0.789 12.7 -0.961 3.23 -- 0.0944 -- -1.16 18.6 -- -- -- --
283.57 0.789 12.7 -0.963 3.23 -- -- -- -1.16 18.6 -- -- -- --
164.4 0.597 12.5 -0.654 -- -3.84 -- -- -0.7 -- 11.95 333 0.0167 7.98
174.71 0.616 12.5 -- 0.493 -3.55 -- -- -0.709 17.6 13.91 316 0.4 7.73
828.51 1.34 12.6 -1.04 -- -- -- -- -1.23 -- -- -- -- --
307.98 0.821 12.7 -- 3.25 -- -- -- -1.05 18.6 -- -- -- --
175.38 0.617 12.5 -- -- -3.92 -- -- -0.68 -- 12.38 336 0.000411 7.95
857.01 1.37 12.6 -- -- -- -- -- -1.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.43 temperature 15.0 270 > th dose dependent rect. 1 7
7 176.88 temperature 10.0 270 > th dose dependent rect. 2 18
10 177.45 temperature 15.0 90 > th dose dependent rect. 3 6
13 179.06 temperature 10.0 30 > th dose dependent rect. 4 18
15 179.84 temperature 10.0 270 > th dose dependent rect. 1 20
27 183.63 temperature 15.0 10 > th dose dependent rect. 3 6
39 186.24 temperature 10.0 270 > th dose dependent rect. 15 16
43 186.74 temperature 20.0 270 > th dose independent rect. 1 7
60 188.69 wind 5.0 90 < th dose dependent rect. 3 6
71 189.74 temperature 20.0 90 > th dose independent rect. 3 6
82 190.72 temperature 15.0 10 > th dose dependent rect. 15 18
84 190.98 temperature 20.0 720 > th dose dependent rect. 18 15
128 194.13 temperature 20.0 1440 > th dose dependent rect. 6 1
129 194.28 temperature 15.0 10 > th dose dependent rect. 17 16
130 194.37 wind 9.0 270 < th dose dependent rect. 1 7
136 194.76 precipitation 0.1 270 < th dose independent rect. 2 17
137 194.76 precipitation 0.1 270 < th dose dependent rect. 2 17
149 195.43 temperature 20.0 720 > th dose dependent sin 11 NA
156 195.71 temperature 20.0 270 > th dose independent rect. 2 18
160 195.79 wind 3.0 90 < th dose independent rect. 3 6
164 195.88 humidity 50.0 270 > th dose dependent rect. 1 8
172 196.07 wind 7.0 43200 > th dose dependent rect. 5 10
173 196.14 wind 7.0 43200 > th dose dependent rect. 8 7
180 196.38 temperature 20.0 1440 > th dose dependent rect. 19 3
196 196.92 temperature 25.0 1440 > th dose dependent rect. 16 6
230 197.61 wind 3.0 270 < th dose independent rect. 1 6
232 197.62 wind 9.0 43200 < th dose independent rect. 18 21
237 197.66 wind 3.0 43200 > th dose dependent rect. 8 7
239 197.68 temperature 25.0 1440 > th dose dependent rect. 12 20
240 197.69 temperature 25.0 1440 > th dose dependent sin 15 NA
242 197.72 wind 7.0 43200 > th dose dependent rect. 24 15
255 197.89 temperature 25.0 1440 > th dose dependent rect. 12 10
267 198.02 humidity 70.0 270 > th dose independent rect. 19 7
284 198.13 precipitation 0.1 270 < th dose independent rect. 1 7
285 198.13 precipitation 0.1 270 < th dose dependent rect. 1 7
312 198.27 wind 9.0 43200 > th dose independent rect. 18 21
331 198.36 humidity 80.0 270 > th dose independent rect. 1 7
382 198.79 wind 9.0 270 < th dose independent rect. 19 7
388 198.84 wind 5.0 43200 > th dose independent rect. 9 7
393 198.90 radiation 20.0 270 < th dose independent rect. 1 7
398 198.93 temperature 10.0 270 > th dose independent rect. 19 7
399 198.93 temperature 30.0 270 < th dose independent rect. 19 7
400 198.93 humidity 50.0 270 > th dose independent rect. 19 7
401 198.93 atmosphere 995.0 270 > th dose independent rect. 19 7
402 198.93 radiation 1.0 270 < th dose independent rect. 19 7
407 198.93 temperature 10.0 270 > th dose independent rect. 2 17
408 198.93 atmosphere 1015.0 270 < th dose independent rect. 2 17
409 198.93 radiation 1.0 270 < th dose dependent rect. 19 7
426 199.06 wind 5.0 43200 < th dose independent rect. 8 8
445 199.20 precipitation 0.1 270 < th dose independent rect. 19 7
446 199.20 precipitation 0.1 270 < th dose dependent rect. 19 7
453 199.28 wind 5.0 43200 < th dose independent rect. 5 12
458 199.31 precipitation 0.1 90 < th dose independent rect. 3 6
459 199.31 precipitation 0.1 90 < th dose dependent rect. 3 6
472 199.41 wind 5.0 43200 > th dose independent rect. 5 12
481 199.46 wind 5.0 90 < th dose dependent rect. 3 8
517 199.76 wind 9.0 43200 < th dose independent rect. 8 7
535 199.88 radiation 40.0 90 < th dose independent rect. 3 6
544 199.96 wind 7.0 43200 > th dose dependent rect. 20 19
599 200.22 wind 9.0 43200 > th dose independent rect. 9 6
613 200.34 wind 5.0 43200 > th dose dependent sin 1 NA
619 200.39 temperature 25.0 1440 > th dose dependent rect. 1 21
672 200.61 wind 9.0 270 < th dose independent rect. 2 17
674 200.62 temperature 25.0 1440 > th dose dependent no NA NA
745 200.85 temperature 25.0 1440 > th dose dependent rect. 15 23
769 200.94 precipitation 0.1 270 < th dose independent rect. 15 15
774 200.94 precipitation 0.1 270 < th dose dependent rect. 15 15
792 201.06 humidity 60.0 90 > th dose independent rect. 3 6
799 201.09 temperature 25.0 4320 < th dose independent rect. 6 2
809 201.13 wind 1.0 270 > th dose independent rect. 19 7
817 201.16 temperature 25.0 1440 > th dose dependent rect. 18 23
822 201.19 temperature 25.0 4320 < th dose independent rect. 5 8
832 201.24 temperature 20.0 1440 > th dose dependent rect. 17 21
881 201.49 wind 7.0 270 < th dose independent rect. 1 7
902 201.55 wind 7.0 43200 > th dose independent rect. 23 17
917 201.59 radiation 40.0 270 < th dose dependent rect. 1 8
984 201.82 wind 9.0 90 < th dose dependent rect. 3 18
985 201.82 radiation 1.0 270 < th dose dependent rect. 5 21
986 201.83 wind 9.0 90 < th dose independent rect. 3 6
987 201.83 temperature 10.0 90 > th dose independent rect. 3 6
990 201.83 atmosphere 995.0 90 > th dose independent rect. 3 6
991 201.83 atmosphere 1015.0 90 < th dose independent rect. 3 6
993 201.83 temperature 10.0 90 > th dose independent rect. 9 18
994 201.83 radiation 1.0 43200 < th dose dependent rect. 19 5