BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0279400 Os01g0279400|AK065048
(497 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G43790.3 | chr3:15655443-15658848 FORWARD LENGTH=485 494 e-140
AT5G13750.1 | chr5:4438318-4441289 FORWARD LENGTH=479 489 e-138
AT5G13740.1 | chr5:4432689-4436483 FORWARD LENGTH=487 464 e-131
AT5G13940.1 | chr5:4490263-4495585 REVERSE LENGTH=810 69 4e-12
>AT3G43790.3 | chr3:15655443-15658848 FORWARD LENGTH=485
Length = 484
Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust.
Identities = 245/473 (51%), Positives = 331/473 (69%), Gaps = 11/473 (2%)
Query: 27 RRRRCPGCLTEERCKADAGIPYLNFFYIWVVCLCSSLPIQSLFPYLYFMIRDLKVAKEEQ 86
+ CPGC+ + + G+PYL+ +IW+V LC++LPI SLFPY+YFMIRD +AK+E+
Sbjct: 13 KNEDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEE 72
Query: 87 DIGFYAGFVGATYFLGRTISAVPWGIFADKYGRKPCIVISILSVIVFNTLFGLSTTYWMA 146
DIGFYAGFVG+++ +GR ++++ WG AD+YGRKP I+I SVI+FNTLFGLST++W+A
Sbjct: 73 DIGFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLA 132
Query: 147 IVTRXXXXXXXXXXXPIKAYASEVCRKEHQALGISLVTSSRAIALVVGPAIGGFLSQPAK 206
I R I+AYASEV +E+ AL +S+V++SR I L++GPAIGG+L+QPA+
Sbjct: 133 ISVRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAE 192
Query: 207 KYPNLFSEESVFGRFPYFLPCFVISVLAAGACVACIWLPETLHMH-HDDKEVIDALEAQD 265
KYPN+FS+ SVFGRFPYFLP VISV A +AC WLPETLH + ++ E D
Sbjct: 193 KYPNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTRCRIAQGRLNPTELND 252
Query: 266 ATSDLGETTKESGSGRMGHTKSLLKNWQLMSAITLYCVFSLHDTAYLEIFSLWAVSSRKY 325
S G ++ ++ + SLL+N LM+ I +YCVFSL + AY EIFSLWAVS R Y
Sbjct: 253 DESRGGGLDEQ----KIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSY 308
Query: 326 RGLSFTSQDVGIVLAISGFGVLVYQLAIYPLLAKYVGPIKPFRYAAVLSILLLSTYPFMA 385
GLSF+SQDVG VLAISG G+LV+QL +YP L K VG + R +AVL I LLS YP++A
Sbjct: 309 GGLSFSSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIA 368
Query: 386 NLYGLELKVLINIASLLKNMFAATITIACNILQNTAVTQEQRGVANGISVTLMSIFKAVA 445
L G+ L ++IN AS++KN + ++ I+ N AV Q QRG ANGIS+T MS+FK+
Sbjct: 369 LLSGVTLHLVINCASIIKNALSISLVTGLFIMLNKAVPQNQRGAANGISMTAMSVFKSFG 428
Query: 446 PAAAGILFSWAQKHITGLFLPG------EQILFLMLNMVSVIGFILTFKPFFA 492
PA G+LFSWAQK FLPG ++++FL+LN+V ++G ILTF P+ +
Sbjct: 429 PAGGGVLFSWAQKRQDATFLPGQIFAPCDEMVFLVLNLVQLVGLILTFIPYIS 481
>AT5G13750.1 | chr5:4438318-4441289 FORWARD LENGTH=479
Length = 478
Score = 489 bits (1260), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/465 (50%), Positives = 318/465 (68%), Gaps = 5/465 (1%)
Query: 28 RRRCPGCLTEERCKADAGIPYLNFFYIWVVCLCSSLPIQSLFPYLYFMIRDLKVAKEEQD 87
C GC ++ + G P+ F +W++ LC++LPI SLFP+LYFMI D +AK+E+D
Sbjct: 15 HEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAKKEED 74
Query: 88 IGFYAGFVGATYFLGRTISAVPWGIFADKYGRKPCIVISILSVIVFNTLFGLSTTYWMAI 147
IGFYAGFVG ++ LGR ++V WG+ AD+YGRKP I+I SV+VFNTLFGLS +WMAI
Sbjct: 75 IGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNFWMAI 134
Query: 148 VTRXXXXXXXXXXXPIKAYASEVCRKEHQALGISLVTSSRAIALVVGPAIGGFLSQPAKK 207
+TR PIKAYA E+ R E+Q L +S V+++ I L++GPAIGGFL+QPAK+
Sbjct: 135 ITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQPAKQ 194
Query: 208 YPNLFSEESVFGRFPYFLPCFVISVLAAGACVACIWLPETLHMHHDDKEVIDALEAQDAT 267
YP+LFS++S+FG+FP+FLPC ISV A + +PETLH H + + E+ DA
Sbjct: 195 YPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDD-----ESYDAL 249
Query: 268 SDLGETTKESGSGRMGHTKSLLKNWQLMSAITLYCVFSLHDTAYLEIFSLWAVSSRKYRG 327
DL + + + SLL NW L+S+I +YCVFSLHD AY EIFSLWA S RKY G
Sbjct: 250 KDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKYGG 309
Query: 328 LSFTSQDVGIVLAISGFGVLVYQLAIYPLLAKYVGPIKPFRYAAVLSILLLSTYPFMANL 387
L +++ DVG VLA SGFG+L++QL++Y + +GPI R + L++++LS YP +A L
Sbjct: 310 LGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIAKL 369
Query: 388 YGLELKVLINIASLLKNMFAATITIACNILQNTAVTQEQRGVANGISVTLMSIFKAVAPA 447
GL L V + AS+ K++ + ILQN AV Q+QRG ANGI++T MS+FKA+ PA
Sbjct: 370 SGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMTAMSLFKAIGPA 429
Query: 448 AAGILFSWAQKHITGLFLPGEQILFLMLNMVSVIGFILTFKPFFA 492
AAGI+FSW++K FLPG Q++F +LN+V +G +LTFKPF A
Sbjct: 430 AAGIIFSWSEKRQGAAFLPGTQMVFFILNVVLALGVVLTFKPFLA 474
>AT5G13740.1 | chr5:4432689-4436483 FORWARD LENGTH=487
Length = 486
Score = 464 bits (1194), Expect = e-131, Method: Compositional matrix adjust.
Identities = 238/466 (51%), Positives = 321/466 (68%), Gaps = 10/466 (2%)
Query: 31 CPGCLTEERCKADAGIPYLNFFYIWVVCLCSSLPIQSLFPYLYFMIRDLKVAKEEQDIGF 90
CPGC E+ + G PYL ++W++ L +SLPI SL+P+LY+MI D VAK E+DIGF
Sbjct: 19 CPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLYYMIEDFGVAKTEKDIGF 78
Query: 91 YAGFVGATYFLGRTISAVPWGIFADKYGRKPCIVISILSVIVFNTLFGLSTTYWMAIVTR 150
YAGFVG ++ LGR +++V WGI AD+YGRKP I++ +S+ +FN LFGLS+ +WMAI TR
Sbjct: 79 YAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIFNALFGLSSNFWMAIGTR 138
Query: 151 XXXXXXXXXXXPIKAYASEVCRKEHQALGISLVTSSRAIALVVGPAIGGFLSQPAKKYPN 210
+KAYASE+ R E+QA +S V+++ I L++GPA+GGFL+QPA KYPN
Sbjct: 139 FLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLIIGPALGGFLAQPADKYPN 198
Query: 211 LFSEESVFGRFPYFLPCFVISVLAAGACVACIWLPETLHMH------HDDKEVIDALEAQ 264
+FS+ES+FGRF Y LPCF IS A V C ++PETLH H HDD D LEA
Sbjct: 199 VFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKLDSLSHDDS--YDILEA- 255
Query: 265 DATSDLGETTKESGSGRMGHTKSLLKNWQLMSAITLYCVFSLHDTAYLEIFSLWAVSSRK 324
A+ + +T ++G ++SLLKNW LMS+I +YCV LHDTAY EIF+LWA S RK
Sbjct: 256 -ASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAYSEIFALWANSPRK 314
Query: 325 YRGLSFTSQDVGIVLAISGFGVLVYQLAIYPLLAKYVGPIKPFRYAAVLSILLLSTYPFM 384
Y GLS+++ +VG VLAISG G+ +Q+ +YPL K +GP+ RYA L I + +YPF+
Sbjct: 315 YGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAGALMIPIQMSYPFI 374
Query: 385 ANLYGLELKVLINIASLLKNMFAATITIACNILQNTAVTQEQRGVANGISVTLMSIFKAV 444
A L GL L +++N AS+L N+ + + ILQN AV Q QRG ANGI++T MS+FK V
Sbjct: 375 AGLSGLSLSLMLNCASILINVLSVSAITGLLILQNRAVDQSQRGAANGIAMTAMSLFKTV 434
Query: 445 APAAAGILFSWAQKHITGLFLPGEQILFLMLNMVSVIGFILTFKPF 490
PA AGILFSW+++ + FLPG ++F +LN++ V+G LTFKPF
Sbjct: 435 GPAGAGILFSWSERRLNAAFLPGSHMVFFVLNVIVVVGVALTFKPF 480
>AT5G13940.1 | chr5:4490263-4495585 REVERSE LENGTH=810
Length = 809
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 16/86 (18%)
Query: 288 LLKNWQLMSAITLYCVFSLHDTAYLEIFSLWAVSSRKYRGLSFTSQDVGIVLAISGFGVL 347
LL NW LMS+I +YC+ LH+TAY EIF+LWA S R+Y GL G+
Sbjct: 159 LLGNWPLMSSIIVYCILCLHETAYSEIFALWANSPRRYGGL----------------GIF 202
Query: 348 VYQLAIYPLLAKYVGPIKPFRYAAVL 373
+Q+ +YPL + +GP+ +A L
Sbjct: 203 FFQVFVYPLAKRLLGPVLVTHFAEAL 228
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.140 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,421,743
Number of extensions: 366176
Number of successful extensions: 1093
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1088
Number of HSP's successfully gapped: 4
Length of query: 497
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 394
Effective length of database: 8,282,721
Effective search space: 3263392074
Effective search space used: 3263392074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 114 (48.5 bits)