Os01g0278200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ran-binding protein 17.
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Os01g0278200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ran-binding protein 17.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.61 | 0.341 | 9.88 | -1.71 | 0.367 | 0.447 | -1.23 | 1.38 | 0.116 | 7.06 | 10 | 252 | -- | -- |
| 54.75 | 0.345 | 9.88 | -1.65 | 0.347 | 0.629 | -1.69 | -- | 0.112 | 9.83 | 5.52 | 236 | -- | -- |
| 55.66 | 0.347 | 9.88 | -1.71 | 0.425 | 0.391 | -- | 1.47 | 0.126 | 6.74 | 10.06 | 190 | -- | -- |
| 66.02 | 0.378 | 9.88 | -1.73 | 0.34 | 0.591 | -- | -- | 0.121 | 8.57 | 13.88 | 260 | -- | -- |
| 62.29 | 0.368 | 9.88 | -1.74 | -- | 0.613 | -- | 1.34 | 0.137 | -- | 11.58 | 387 | -- | -- |
| 66.71 | 0.383 | 9.89 | -1.73 | 0.634 | -- | 1.1 | -- | 0.111 | 3.22 | -- | -- | -- | -- |
| 69.05 | 0.389 | 9.89 | -1.75 | 0.675 | -- | -- | -- | 0.104 | 4.16 | -- | -- | -- | -- |
| 65.54 | 0.377 | 9.89 | -1.72 | -- | 0.729 | -- | -- | 0.142 | -- | 4.235 | 518 | -- | -- |
| 143.09 | 0.557 | 9.83 | -- | 0.355 | 0.642 | -- | -- | 0.338 | 8.38 | 23.02 | 234 | -- | -- |
| 93.72 | 0.452 | 9.89 | -1.72 | -- | -- | -- | -- | 0.122 | -- | -- | -- | -- | -- |
| 149.61 | 0.572 | 9.84 | -- | 0.641 | -- | -- | -- | 0.299 | 4.2 | -- | -- | -- | -- |
| 141.48 | 0.554 | 9.88 | -- | -- | 0.755 | -- | -- | 0.296 | -- | 0.001489 | 544 | -- | -- |
| 171.86 | 0.612 | 9.85 | -- | -- | -- | -- | -- | 0.313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.48 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 2 | 48.70 | humidity | 60 | 90 | > th | dose dependent | rect. | 15 | 20 |
| 7 | 48.88 | humidity | 70 | 90 | > th | dose independent | rect. | 15 | 17 |
| 8 | 48.98 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 13 | 49.07 | humidity | 60 | 10 | > th | dose dependent | rect. | 15 | 19 |
| 15 | 49.09 | temperature | 10 | 270 | > th | dose dependent | sin | 3 | NA |
| 33 | 49.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 40 | 49.34 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 16 |
| 42 | 49.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 126 | 49.87 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 10 |
| 131 | 49.90 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 165 | 50.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 16 |
| 169 | 50.09 | temperature | 25 | 270 | < th | dose independent | sin | 6 | NA |
| 199 | 50.17 | radiation | 10 | 270 | < th | dose independent | rect. | 14 | 18 |
| 357 | 50.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 438 | 50.88 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 8 |
| 447 | 50.91 | radiation | 30 | 270 | < th | dose dependent | rect. | 14 | 19 |
| 526 | 51.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 533 | 51.14 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 8 |
| 585 | 51.24 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 10 |
| 607 | 51.28 | humidity | 90 | 90 | < th | dose independent | sin | 23 | NA |
| 634 | 51.34 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 8 |
| 671 | 51.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 693 | 51.48 | humidity | 70 | 270 | > th | dose independent | rect. | 13 | 8 |
| 727 | 51.54 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 10 |
| 863 | 51.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 876 | 51.76 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 16 |
| 900 | 51.81 | temperature | 30 | 720 | < th | dose independent | sin | 0 | NA |
| 943 | 51.86 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 10 |
| 977 | 51.89 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 14 | 16 |