BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0278200 Os01g0278200|AK071473
         (55 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06120.1  | chr5:1844797-1852601 FORWARD LENGTH=1067            77   1e-15

>AT5G06120.1 | chr5:1844797-1852601 FORWARD LENGTH=1067
          Length = 1066

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/47 (68%), Positives = 40/47 (85%)

Query: 5    LQPVDQQQRLSQCFEKLMSDVARNLEPKNRDKFTKNLTTFRHDFRVK 51
            +QP DQ QRLS CF+ LM+D++R L+ KNRDKFT+NLT FRH+FRVK
Sbjct: 1020 VQPADQHQRLSACFDSLMTDISRGLDSKNRDKFTQNLTLFRHEFRVK 1066



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,097,676
Number of extensions: 28904
Number of successful extensions: 106
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 1
Length of query: 55
Length of database: 11,106,569
Length adjustment: 28
Effective length of query: 27
Effective length of database: 10,338,921
Effective search space: 279150867
Effective search space used: 279150867
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)