Os01g0277700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0277700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.75 | 0.234 | 9.72 | 0.213 | 0.345 | -0.698 | 0.0854 | -0.527 | 0.134 | 1.11 | 19.9 | 1650 | -- | -- |
| 25.19 | 0.234 | 9.73 | 0.145 | 0.348 | -0.59 | 0.129 | -- | 0.118 | 0.942 | 20.2 | 1671 | -- | -- |
| 24.78 | 0.232 | 9.72 | 0.211 | 0.345 | -0.697 | -- | -0.532 | 0.134 | 1.2 | 19.91 | 1671 | -- | -- |
| 25.22 | 0.234 | 9.73 | 0.134 | 0.347 | -0.59 | -- | -- | 0.113 | 1.18 | 20.22 | 1671 | -- | -- |
| 31.32 | 0.261 | 9.72 | 0.175 | -- | -0.695 | -- | -0.496 | 0.119 | -- | 20.3 | 2356 | -- | -- |
| 32.11 | 0.266 | 9.71 | 0.384 | 0.347 | -- | 0.131 | -- | 0.242 | 1.02 | -- | -- | -- | -- |
| 32.18 | 0.266 | 9.71 | 0.379 | 0.347 | -- | -- | -- | 0.241 | 1.17 | -- | -- | -- | -- |
| 31.77 | 0.263 | 9.74 | 0.115 | -- | -0.602 | -- | -- | 0.0943 | -- | 20.3 | 2386 | -- | -- |
| 25.62 | 0.236 | 9.74 | -- | 0.353 | -0.632 | -- | -- | 0.105 | 1.21 | 20.2 | 1732 | -- | -- |
| 39.64 | 0.294 | 9.7 | 0.392 | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
| 35.96 | 0.281 | 9.72 | -- | 0.354 | -- | -- | -- | 0.198 | 1.21 | -- | -- | -- | -- |
| 31.9 | 0.263 | 9.74 | -- | -- | -0.662 | -- | -- | 0.079 | -- | 20.23 | 2386 | -- | -- |
| 43.7 | 0.309 | 9.71 | -- | -- | -- | -- | -- | 0.204 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 20 |
| 2 | 24.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 5 | 24.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 18 |
| 50 | 24.60 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 68 | 24.67 | temperature | 20 | 1440 | > th | dose independent | sin | 3 | NA |
| 76 | 24.69 | temperature | 20 | 1440 | < th | dose independent | sin | 3 | NA |
| 104 | 24.77 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 118 | 24.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 144 | 24.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 160 | 24.90 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 171 | 24.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 175 | 24.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 189 | 24.93 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 206 | 24.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 240 | 24.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 261 | 24.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 385 | 25.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 457 | 25.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 5 |
| 473 | 25.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 493 | 25.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 515 | 25.28 | temperature | 20 | 720 | > th | dose independent | sin | 15 | NA |
| 691 | 25.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 693 | 25.56 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 9 |
| 728 | 25.61 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 736 | 25.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 737 | 25.63 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 752 | 25.65 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 18 |
| 784 | 25.70 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 5 |
| 788 | 25.70 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 17 |
| 798 | 25.71 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 20 |
| 811 | 25.72 | temperature | 20 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 815 | 25.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 843 | 25.75 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 888 | 25.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 899 | 25.79 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 18 |
| 910 | 25.80 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 912 | 25.80 | temperature | 25 | 1440 | < th | dose dependent | sin | 5 | NA |
| 952 | 25.82 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 18 |
| 963 | 25.82 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 23 |