BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0277700 Os01g0277700|AK061133
         (241 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G21070.1  | chr5:7156356-7157490 FORWARD LENGTH=226            343   6e-95

>AT5G21070.1 | chr5:7156356-7157490 FORWARD LENGTH=226
          Length = 225

 Score =  343 bits (879), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 174/223 (78%), Positives = 191/223 (85%), Gaps = 1/223 (0%)

Query: 19  WTAEEASTIGGIATVSLLHSFIPTHWLPFSIVARAQRWPLSRTLLVTAFGGVLHVVSTAL 78
           +TAE+ STIGGIATVSLLHSFIPTHWLPFSIV RAQ+W LSRTLLVTAFG VLHV+ST+L
Sbjct: 4   FTAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLLVTAFGAVLHVISTSL 63

Query: 79  LGITAVTMANTIAGEETVHKLASLLLIVLGGSYILLFALGKGGHGHAHNHPMEKMAVAGL 138
           LGITA+TMANTIAGEETVHKLASLLL+ LGGSY+LLF  GKGGH H+HN PMEKMAVAGL
Sbjct: 64  LGITAITMANTIAGEETVHKLASLLLVFLGGSYVLLFLAGKGGHTHSHNQPMEKMAVAGL 123

Query: 139 VLVPALSPCATTLPVFLAVGNSSSMMILAIIVLLFSTITVMTSLVALSFYGASQIKFHWV 198
           VLVPALSPCATTLPVFLAVGNS SMM+LAIIVLLFSTI VMTSLVALSFYGASQ+KFHWV
Sbjct: 124 VLVPALSPCATTLPVFLAVGNSKSMMVLAIIVLLFSTILVMTSLVALSFYGASQLKFHWV 183

Query: 199 ERYDKIXXXXXXXXXXXXTYVFHHHDGDEHSLHEHVHRKLVGL 241
           ERYDK+            T +FH HD   H  H+ +HRK++ L
Sbjct: 184 ERYDKLLVGSVLCLVGILTLLFHDHDHGGHEAHQ-LHRKIITL 225



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,104,341
Number of extensions: 138564
Number of successful extensions: 591
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 591
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 145
Effective length of database: 8,474,633
Effective search space: 1228821785
Effective search space used: 1228821785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)