Os01g0269000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hydroxymethylglutaryl-CoA lyase.
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Os01g0269000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hydroxymethylglutaryl-CoA lyase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.44 | 0.263 | 11.7 | -1.19 | 0.615 | 0.581 | 0.576 | -1.16 | -0.213 | 12.2 | 24.6 | 12 | -- | -- |
| 31.97 | 0.263 | 11.6 | -1.04 | 0.626 | 0.503 | 0.418 | -- | -0.193 | 12.1 | 24.18 | 18 | -- | -- |
| 32.62 | 0.266 | 11.6 | -1.08 | 0.618 | 0.531 | -- | -0.358 | -0.195 | 12.3 | 24.2 | 13 | -- | -- |
| 32.69 | 0.266 | 11.6 | -1.03 | 0.621 | 0.5 | -- | -- | -0.183 | 12.3 | 24.1 | 14 | -- | -- |
| 50.06 | 0.33 | 11.7 | -1.14 | -- | 1.06 | -- | 0.158 | -0.294 | -- | 19.09 | 4 | -- | -- |
| 35.51 | 0.279 | 11.6 | -0.966 | 0.789 | -- | 0.493 | -- | -0.122 | 12.9 | -- | -- | -- | -- |
| 36.53 | 0.283 | 11.6 | -0.948 | 0.789 | -- | -- | -- | -0.119 | 12.9 | -- | -- | -- | -- |
| 49.92 | 0.329 | 11.7 | -1.19 | -- | 1.07 | -- | -- | -0.307 | -- | 19.11 | 2 | -- | -- |
| 59.32 | 0.361 | 11.6 | -- | 0.725 | 0.234 | -- | -- | -0.0305 | 12.8 | 24.8 | 12 | -- | -- |
| 75.28 | 0.405 | 11.6 | -0.977 | -- | -- | -- | -- | -0.134 | -- | -- | -- | -- | -- |
| 60.2 | 0.363 | 11.6 | -- | 0.804 | -- | -- | -- | -0.0133 | 13 | -- | -- | -- | -- |
| 83.16 | 0.426 | 11.6 | -- | -- | 0.842 | -- | -- | -0.0924 | -- | 24.4 | 7 | -- | -- |
| 100.46 | 0.468 | 11.6 | -- | -- | -- | -- | -- | -0.0255 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 3 | 29.30 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 16 |
| 7 | 29.34 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 10 | 29.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 13 | 29.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 14 | 29.52 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 19 | 29.57 | temperature | 30 | 30 | < th | dose dependent | rect. | 2 | 17 |
| 24 | 29.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 19 |
| 52 | 29.91 | temperature | 10 | 10 | > th | dose dependent | sin | 2 | NA |
| 82 | 30.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 18 |
| 100 | 30.20 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 109 | 30.22 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 12 |
| 135 | 30.35 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 136 | 30.36 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 154 | 30.39 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 10 |
| 160 | 30.41 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 176 | 30.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 180 | 30.46 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 7 |
| 191 | 30.48 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 198 | 30.50 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 201 | 30.51 | temperature | 25 | 30 | < th | dose independent | rect. | 2 | 14 |
| 222 | 30.56 | temperature | 25 | 30 | < th | dose independent | rect. | 2 | 12 |
| 224 | 30.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 230 | 30.57 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 253 | 30.61 | wind | 9 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 281 | 30.66 | wind | 9 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 286 | 30.67 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 10 |
| 290 | 30.67 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 298 | 30.68 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 12 |
| 323 | 30.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 348 | 30.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 392 | 30.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 393 | 30.78 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 398 | 30.79 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 430 | 30.84 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |
| 445 | 30.86 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 451 | 30.87 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 494 | 30.92 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 534 | 30.96 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 595 | 31.01 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 601 | 31.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 10 |
| 608 | 31.03 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 624 | 31.04 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 632 | 31.04 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 8 |
| 643 | 31.05 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 651 | 31.06 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 5 |
| 693 | 31.09 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 8 |
| 707 | 31.10 | temperature | 25 | 10 | < th | dose independent | rect. | 2 | 18 |
| 738 | 31.12 | temperature | 25 | 30 | < th | dose independent | sin | 3 | NA |
| 742 | 31.12 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 11 | 19 |
| 780 | 31.15 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 11 | 21 |
| 792 | 31.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 10 |
| 870 | 31.22 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 12 |
| 873 | 31.22 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 892 | 31.24 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 12 |
| 912 | 31.25 | wind | 5 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 923 | 31.25 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 973 | 31.29 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 12 |
| 984 | 31.30 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |