Os01g0266100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RING finger family protein.
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Os01g0266100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RING finger family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 269.04 | 0.771 | 5.01 | -0.15 | 1.17 | 1.52 | 1.36 | -2.02 | 0.54 | 20.2 | 28.5 | 6754 | -- | -- |
| 268.85 | 0.764 | 5.05 | -0.148 | 1.14 | 1.9 | 1.48 | -- | 0.575 | 20.2 | 24.86 | 11329 | -- | -- |
| 274.54 | 0.772 | 5.01 | -0.156 | 1.17 | 1.51 | -- | -2.1 | 0.537 | 20 | 28.2 | 6690 | -- | -- |
| 274.93 | 0.772 | 5.05 | -0.198 | 1.14 | 1.87 | -- | -- | 0.572 | 20 | 25.06 | 11328 | -- | -- |
| 347.03 | 0.868 | 4.96 | -0.105 | -- | 1.43 | -- | -2.51 | 0.55 | -- | 34.73 | 7162 | -- | -- |
| 318.46 | 0.837 | 5.18 | -1.43 | 1.14 | -- | 1.34 | -- | -0.0145 | 20 | -- | -- | -- | -- |
| 323.65 | 0.842 | 5.18 | -1.47 | 1.15 | -- | -- | -- | -0.012 | 19.8 | -- | -- | -- | -- |
| 345.22 | 0.865 | 5.02 | -0.175 | -- | 1.91 | -- | -- | 0.577 | -- | 24.84 | 11496 | -- | -- |
| 275.31 | 0.773 | 5.04 | -- | 1.13 | 2.01 | -- | -- | 0.624 | 20 | 24.46 | 11456 | -- | -- |
| 395.21 | 0.929 | 5.15 | -1.48 | -- | -- | -- | -- | -0.0281 | -- | -- | -- | -- | -- |
| 380.35 | 0.912 | 5.14 | -- | 1.16 | -- | -- | -- | 0.151 | 19.7 | -- | -- | -- | -- |
| 345.55 | 0.866 | 5.01 | -- | -- | 2.02 | -- | -- | 0.616 | -- | 24.47 | 11511 | -- | -- |
| 453.02 | 0.993 | 5.12 | -- | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 267.50 | temperature | 30 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 3 | 267.55 | temperature | 10 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 7 | 267.94 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 13 | 268.10 | temperature | 10 | 14400 | > th | dose dependent | rect. | 2 | 4 |
| 29 | 268.22 | temperature | 30 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 30 | 268.22 | temperature | 10 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 41 | 268.26 | temperature | 10 | 14400 | > th | dose dependent | rect. | 23 | 4 |
| 51 | 268.28 | temperature | 30 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 106 | 268.41 | temperature | 30 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 141 | 268.49 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 158 | 268.56 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 195 | 268.67 | temperature | 10 | 14400 | > th | dose dependent | sin | 10 | NA |
| 200 | 268.68 | temperature | 30 | 14400 | < th | dose dependent | sin | 10 | NA |
| 258 | 268.81 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 259 | 268.81 | wind | 5 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 292 | 268.88 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 365 | 269.00 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 467 | 269.13 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 21 |
| 506 | 269.19 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 578 | 269.28 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 616 | 269.32 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 17 |
| 653 | 269.37 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 686 | 269.40 | temperature | 25 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 691 | 269.41 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 743 | 269.46 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 8 |
| 800 | 269.52 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 801 | 269.52 | temperature | 10 | 14400 | > th | dose dependent | no | NA | NA |
| 808 | 269.53 | humidity | 80 | 43200 | > th | dose dependent | rect. | 15 | 4 |
| 902 | 269.61 | temperature | 10 | 14400 | > th | dose dependent | rect. | 4 | 23 |
| 906 | 269.62 | temperature | 30 | 14400 | < th | dose dependent | no | NA | NA |
| 932 | 269.65 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 948 | 269.66 | temperature | 25 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 991 | 269.70 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 18 |