BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0266100 Os01g0266100|AK063246
(204 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G01150.1 | chr2:100703-101146 FORWARD LENGTH=148 59 1e-09
AT1G15100.1 | chr1:5193703-5194170 REVERSE LENGTH=156 57 7e-09
AT5G20885.1 | chr5:7084133-7084663 REVERSE LENGTH=177 49 1e-06
AT1G80400.1 | chr1:30225864-30227360 FORWARD LENGTH=408 47 5e-06
AT5G41430.1 | chr5:16586119-16586604 REVERSE LENGTH=162 47 6e-06
AT3G43430.1 | chr3:15354758-15355261 REVERSE LENGTH=168 47 8e-06
>AT2G01150.1 | chr2:100703-101146 FORWARD LENGTH=148
Length = 147
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 30/41 (73%)
Query: 94 RGRDAAPVDCVFCLSRVDDGEEVRELRCRHVFHRACLDAWL 134
R D A DC+ CLS++ GEEVR+L CRHVFH+ CL+ WL
Sbjct: 65 RYSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWL 105
>AT1G15100.1 | chr1:5193703-5194170 REVERSE LENGTH=156
Length = 155
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 28/33 (84%)
Query: 102 DCVFCLSRVDDGEEVRELRCRHVFHRACLDAWL 134
DCV CLS++ +GEEVR+L CRHVFH+ CL+ WL
Sbjct: 85 DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWL 117
>AT5G20885.1 | chr5:7084133-7084663 REVERSE LENGTH=177
Length = 176
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 85 DRLAVAMYRRGRDAAPV----DCVFCLSRVDDGEEVRELR-CRHVFHRACLDAWL 134
+ L+V +R + +P C CL ++DG+EVRELR C H+FHR C+D WL
Sbjct: 60 ESLSVTTFRDAAERSPAMINDTCAVCLGDLEDGDEVRELRNCSHMFHRECIDRWL 114
>AT1G80400.1 | chr1:30225864-30227360 FORWARD LENGTH=408
Length = 407
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 95 GRDAAPVDCVFCLSRVDDGEEVRELRCRHVFHRACLDAWLVL 136
G DA+ C CL+R D E+VREL C HVFH C+D WL +
Sbjct: 350 GEDAS---CCICLTRYGDDEQVRELPCSHVFHVDCVDKWLKI 388
>AT5G41430.1 | chr5:16586119-16586604 REVERSE LENGTH=162
Length = 161
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 101 VDCVFCLSRVDDGEEV-RELRCRHVFHRACLDAWLVLPRA 139
+ C CL ++DG E+ R +CRHVFHR+C+D+WL R+
Sbjct: 115 IGCSICLEELEDGHEIIRIKKCRHVFHRSCIDSWLKQNRS 154
>AT3G43430.1 | chr3:15354758-15355261 REVERSE LENGTH=168
Length = 167
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 85 DRLAVAMYRRGRDAAPVD----CVFCLSRVDDGEEVRELR-CRHVFHRACLDAWL 134
+ LAV+ +R + +P C CL ++D +E+RELR C HVFHR C+D WL
Sbjct: 61 ESLAVSAFRDAVERSPAAINDMCAVCLGDLEDEDEIRELRNCTHVFHRDCIDRWL 115
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.331 0.143 0.504
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,168,457
Number of extensions: 50505
Number of successful extensions: 505
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 9
Length of query: 204
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 110
Effective length of database: 8,529,465
Effective search space: 938241150
Effective search space used: 938241150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 109 (46.6 bits)