Os01g0261500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0261500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.4 | 0.232 | 8.47 | -1.25 | 0.406 | 0.357 | 0.251 | -0.945 | -0.104 | 22.8 | 19.67 | 1490 | -- | -- |
| 25.36 | 0.235 | 8.45 | -1.17 | 0.385 | 0.524 | 0.296 | -- | -0.0894 | 22.8 | 18.92 | 2763 | -- | -- |
| 24.62 | 0.231 | 8.47 | -1.26 | 0.409 | 0.372 | -- | -0.936 | -0.107 | 22.8 | 19.66 | 1590 | -- | -- |
| 25.35 | 0.235 | 8.45 | -1.23 | 0.4 | 0.66 | -- | -- | -0.0983 | 22.7 | 18.3 | 2980 | -- | -- |
| 33.9 | 0.271 | 8.47 | -1.31 | -- | 0.429 | -- | -0.764 | -0.141 | -- | 20.24 | 2236 | -- | -- |
| 30.44 | 0.259 | 8.42 | -0.914 | 0.405 | -- | 0.273 | -- | 0.0188 | 22.9 | -- | -- | -- | -- |
| 30.75 | 0.26 | 8.42 | -0.925 | 0.404 | -- | -- | -- | 0.0179 | 22.9 | -- | -- | -- | -- |
| 34.7 | 0.274 | 8.43 | -1.09 | -- | 0.45 | -- | -- | -0.0957 | -- | 21.22 | 858 | -- | -- |
| 37.39 | 0.285 | 8.35 | -- | 0.413 | -0.585 | -- | -- | 0.325 | 22.9 | 22.1 | 47520 | -- | -- |
| 40.88 | 0.299 | 8.41 | -0.917 | -- | -- | -- | -- | 0.0206 | -- | -- | -- | -- | -- |
| 53.33 | 0.342 | 8.4 | -- | 0.397 | -- | -- | -- | 0.121 | 22.7 | -- | -- | -- | -- |
| 48.05 | 0.323 | 8.35 | -- | -- | -0.567 | -- | -- | 0.32 | -- | 22.09 | 47520 | -- | -- |
| 63.05 | 0.371 | 8.39 | -- | -- | -- | -- | -- | 0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.13 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 2 | 24.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 11 |
| 4 | 24.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 5 | 24.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 6 | 24.18 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 7 | 24.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 9 | 24.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 17 | 24.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 18 | 24.21 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 26 | 24.21 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 40 | 24.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 17 |
| 41 | 24.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 17 |
| 99 | 24.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 144 | 24.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 330 | 24.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 331 | 24.42 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 332 | 24.42 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 348 | 24.42 | temperature | 20 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 351 | 24.43 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 359 | 24.43 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 374 | 24.44 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 375 | 24.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 390 | 24.45 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 401 | 24.45 | temperature | 20 | 1440 | < th | dose dependent | rect. | 19 | 11 |
| 415 | 24.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 422 | 24.47 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 463 | 24.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 490 | 24.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 515 | 24.55 | temperature | 20 | 1440 | < th | dose dependent | sin | 12 | NA |
| 569 | 24.61 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 570 | 24.61 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 581 | 24.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 595 | 24.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 674 | 24.69 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 705 | 24.72 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 706 | 24.72 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 713 | 24.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 771 | 24.79 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 872 | 24.88 | temperature | 20 | 1440 | < th | dose dependent | rect. | 21 | 20 |
| 915 | 24.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 917 | 24.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 922 | 24.90 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |