BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0261500 Os01g0261500|AK101899
         (175 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19690.1  | chr1:6807925-6809562 REVERSE LENGTH=353            110   3e-25

>AT1G19690.1 | chr1:6807925-6809562 REVERSE LENGTH=353
          Length = 352

 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 88/148 (59%), Gaps = 6/148 (4%)

Query: 20  LSKSATIMTLCVDYC---SAVDTIAXXXXXXXXXXXXXXXQYTARIHVADICQAILASMS 76
           L  S  I+ L   Y    SA+DT+                ++T+R+HV DICQ + A+  
Sbjct: 200 LGVSTQILRLGGIYGPGRSAIDTLLKQERLSEGQKRRASRKFTSRVHVEDICQVLKAATE 259

Query: 77  IRSARRIYNVVDDDPAPRSEVFAFARSLVERKHPGLIMDS---VVLPATQDRIVAAEKRV 133
             ++  IYN+VDDDPA R EVF +A  L+E++ PG I       +  + ++  +  EKRV
Sbjct: 260 KPASGEIYNIVDDDPAAREEVFEYALELIEKRWPGNITTKPFPFLYESREESSLRGEKRV 319

Query: 134 SNARLKEELGVKLLHPTYKSGLQSILDS 161
            N R+K++LGVKLL+P+YKSGLQSI+++
Sbjct: 320 CNERMKDKLGVKLLYPSYKSGLQSIVEN 347



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,216,835
Number of extensions: 101594
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 83
Effective length of database: 8,584,297
Effective search space: 712496651
Effective search space used: 712496651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)