Os01g0261100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os01g0261100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.45 | 0.137 | 12.9 | 0.604 | 0.487 | -0.352 | -0.383 | 0.212 | 0.32 | 6.91 | 0.4791 | 80 | -- | -- |
| 8.55 | 0.136 | 12.9 | 0.605 | 0.488 | -0.35 | -0.355 | -- | 0.318 | 6.88 | 0.9377 | 80 | -- | -- |
| 8.81 | 0.138 | 12.9 | 0.597 | 0.484 | -0.362 | -- | 0.126 | 0.32 | 6.96 | 1.087 | 80 | -- | -- |
| 8.84 | 0.138 | 12.9 | 0.602 | 0.486 | -0.371 | -- | -- | 0.322 | 7.02 | 0.7796 | 80 | -- | -- |
| 11.49 | 0.158 | 12.9 | 0.665 | -- | -0.603 | -- | 0.635 | 0.375 | -- | -0.0003091 | 678 | -- | -- |
| 10.11 | 0.149 | 12.9 | 0.602 | 0.514 | -- | -0.412 | -- | 0.304 | 5.4 | -- | -- | -- | -- |
| 10.53 | 0.152 | 12.9 | 0.601 | 0.511 | -- | -- | -- | 0.306 | 5.41 | -- | -- | -- | -- |
| 12.06 | 0.162 | 12.9 | 0.645 | -- | -0.58 | -- | -- | 0.371 | -- | -15.96 | 679 | -- | -- |
| 18.36 | 0.2 | 12.9 | -- | 0.493 | -0.371 | -- | -- | 0.254 | 6.89 | 1.644 | 66 | -- | -- |
| 24.14 | 0.23 | 12.9 | 0.619 | -- | -- | -- | -- | 0.318 | -- | -- | -- | -- | -- |
| 20.07 | 0.21 | 12.9 | -- | 0.521 | -- | -- | -- | 0.239 | 5.37 | -- | -- | -- | -- |
| 23.02 | 0.223 | 12.9 | -- | -- | -0.559 | -- | -- | 0.297 | -- | -17.58 | 672 | -- | -- |
| 34.23 | 0.273 | 12.9 | -- | -- | -- | -- | -- | 0.25 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 7.87 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 3 | 8.00 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 5 | 8.03 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 8 | 8.15 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 11 | 8.19 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 14 | 8.21 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 14 |
| 15 | 8.22 | humidity | 70 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 17 | 8.24 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 18 | 8.25 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 12 |
| 21 | 8.26 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 22 | 8.26 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 50 | 8.31 | radiation | 40 | 43200 | > th | dose independent | sin | 14 | NA |
| 57 | 8.32 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 58 | 8.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 59 | 8.32 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 60 | 8.32 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 10 |
| 63 | 8.33 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 65 | 8.33 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 66 | 8.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 69 | 8.34 | radiation | 20 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 70 | 8.34 | radiation | 10 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 78 | 8.34 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 84 | 8.34 | radiation | 40 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 86 | 8.35 | radiation | 10 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 94 | 8.35 | radiation | 10 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 135 | 8.36 | radiation | 20 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 142 | 8.36 | radiation | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 151 | 8.37 | radiation | 20 | 43200 | > th | dose independent | sin | 13 | NA |
| 183 | 8.37 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 190 | 8.38 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 196 | 8.38 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 216 | 8.38 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 6 |
| 235 | 8.39 | radiation | 10 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 238 | 8.39 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 3 |
| 259 | 8.40 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 304 | 8.41 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 307 | 8.41 | radiation | 10 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 372 | 8.41 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 419 | 8.41 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 439 | 8.42 | radiation | 10 | 43200 | < th | dose dependent | sin | 3 | NA |
| 445 | 8.42 | radiation | 30 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 454 | 8.42 | radiation | 30 | 90 | < th | dose dependent | rect. | 4 | 11 |
| 457 | 8.42 | radiation | 10 | 43200 | < th | dose dependent | rect. | 5 | 12 |
| 460 | 8.42 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 13 |
| 476 | 8.42 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 18 |
| 483 | 8.42 | humidity | 60 | 43200 | < th | dose dependent | rect. | 21 | 20 |
| 517 | 8.43 | radiation | 20 | 90 | < th | dose dependent | sin | 1 | NA |
| 518 | 8.43 | radiation | 10 | 43200 | < th | dose dependent | sin | 1 | NA |
| 525 | 8.43 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 572 | 8.43 | radiation | 10 | 43200 | < th | dose dependent | rect. | 15 | 21 |
| 580 | 8.43 | radiation | 10 | 43200 | < th | dose dependent | rect. | 12 | 23 |
| 587 | 8.44 | radiation | 10 | 270 | < th | dose independent | sin | 3 | NA |
| 632 | 8.44 | humidity | 60 | 43200 | < th | dose dependent | sin | 20 | NA |
| 637 | 8.44 | radiation | 10 | 43200 | < th | dose dependent | no | NA | NA |
| 639 | 8.44 | radiation | 10 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 646 | 8.44 | radiation | 1 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 659 | 8.44 | radiation | 1 | 90 | > th | dose dependent | rect. | 6 | 12 |
| 739 | 8.45 | radiation | 20 | 43200 | > th | dose independent | no | NA | NA |
| 743 | 8.45 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 758 | 8.45 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 762 | 8.45 | radiation | 30 | 43200 | > th | dose independent | rect. | 7 | 9 |
| 930 | 8.45 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 20 |