Os01g0253600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os01g0253600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.5 | 0.237 | 11.3 | 0.402 | 0.703 | -0.631 | 0.0462 | 1.74 | 0.162 | 6.68 | 39.35 | 1009 | -- | -- |
| 27.88 | 0.246 | 11.3 | 0.745 | 0.652 | -0.582 | 0.0304 | -- | 0.251 | 6.35 | 66.38 | 1359 | -- | -- |
| 25.51 | 0.235 | 11.3 | 0.401 | 0.7 | -0.629 | -- | 1.74 | 0.162 | 6.66 | 41.69 | 1021 | -- | -- |
| 27.88 | 0.246 | 11.3 | 0.745 | 0.653 | -0.581 | -- | -- | 0.251 | 6.32 | 69.09 | 1372 | -- | -- |
| 48.54 | 0.325 | 11.3 | 0.352 | -- | -0.643 | -- | 1.81 | 0.193 | -- | 34.78 | 1253 | -- | -- |
| 33.59 | 0.272 | 11.2 | 0.927 | 0.676 | -- | -0.0487 | -- | 0.357 | 6.11 | -- | -- | -- | -- |
| 33.59 | 0.271 | 11.2 | 0.927 | 0.676 | -- | -- | -- | 0.357 | 6.13 | -- | -- | -- | -- |
| 49.85 | 0.329 | 11.3 | 0.739 | -- | -0.659 | -- | -- | 0.251 | -- | 257 | 1333 | -- | -- |
| 28.64 | 0.249 | 11.3 | -- | 0.676 | -0.934 | -- | -- | 0.0567 | 6.14 | 21.56 | 38374 | -- | -- |
| 57.3 | 0.354 | 11.3 | 0.946 | -- | -- | -- | -- | 0.372 | -- | -- | -- | -- | -- |
| 56.25 | 0.351 | 11.3 | -- | 0.69 | -- | -- | -- | 0.254 | 6.06 | -- | -- | -- | -- |
| 52.24 | 0.337 | 11.3 | -- | -- | -0.939 | -- | -- | 0.0497 | -- | 22.1 | 38582 | -- | -- |
| 80.91 | 0.42 | 11.3 | -- | -- | -- | -- | -- | 0.267 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 20 |
| 5 | 24.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 18 |
| 13 | 25.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 30 | 25.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 15 |
| 33 | 25.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 39 | 25.33 | temperature | 10 | 720 | > th | dose dependent | sin | 21 | NA |
| 43 | 25.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 13 |
| 77 | 25.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 8 |
| 84 | 25.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 98 | 25.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 122 | 25.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 8 |
| 129 | 25.56 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 272 | 25.72 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 375 | 25.82 | temperature | 30 | 1440 | < th | dose dependent | sin | 18 | NA |
| 533 | 25.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 729 | 26.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 781 | 26.17 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 829 | 26.20 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 935 | 26.27 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 988 | 26.29 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 989 | 26.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 23 |